Commit b15dc98f authored by Romain Therville's avatar Romain Therville 🐭
Browse files

Merge branch 'Issue191_DemultiplexONT' into 'master'

#191 Correcting the issue on ont_qc

See merge request !112
parents a2966774 ec0e5da5
...@@ -109,13 +109,13 @@ class Demultiplex_ONT (Analysis): ...@@ -109,13 +109,13 @@ class Demultiplex_ONT (Analysis):
str_input = "" str_input = ""
str_output = "" str_output = ""
for fastq in self.fastq_files: for fastq in self.fastq_files:
str_input = str_input + " $" + str(iter) str_input += ' ${' + str(iter) + '}'
iter = iter + 1 iter += 1
str_output = " $"+ str(iter) str_output = ' ${'+ str(iter) + '}'
# Create cmd # Create cmd
self.add_shell_execution(self.get_exec_path("seqkit") +" stats --all " + str_input + ">" + str_output, self.add_shell_execution(self.get_exec_path("seqkit") +" stats --all " + str_input + ">" + str_output,
cmd_format='{EXE} {IN} {OUT}' , cmd_format='{EXE} {IN} {OUT}',
map=False, map=False,
inputs = [self.fastq_files], inputs = [self.fastq_files],
outputs = os.path.join(self.output_directory, "DemultiplexONT.output")) outputs = os.path.join(self.output_directory, "DemultiplexONT.output"))
......
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