Commit af5e02e5 authored by Jerome Mariette's avatar Jerome Mariette
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parent 2412a922
......@@ -2,6 +2,8 @@
classification = alignment
[parameters]
; Should files be computed together (as samples) or independently
$;USE_FILES_AS_SAMPLE$; = Yes
$;ANALYSE_NAME$; = MothurAlign
; The analyse description to display in ng6
$;ANALYSE_DESCRIPTION$; = Aligne les sequences contre une banque de 16S et nettoie les sequences alignees.
......@@ -14,8 +16,6 @@ $;INPUT_FILE$; =
$;INPUT_DIRECTORY$; =
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$; = fasta
; the quality file list if fasta is the input format
$;QUAL_FILE_LIST$; =
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run_newbler/$;PIPELINEID$;_raw_input/run.cfg
; OR The project id the analyse belongs to
......@@ -30,6 +30,7 @@ $;OUTPUT_TOKEN$; = default
$;OUTPUT_DIRECTORY$; = $;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
$;ALIGNED_FASTA_LIST$; = $;OUTPUT_DIRECTORY$;/aligned.fasta.list
$;ALIGNED_NAME_LIST$; = $;OUTPUT_DIRECTORY$;/aligned.name.list
$;GROUP_LIST$; = $;OUTPUT_DIRECTORY$;/group.list
$;ANALYSIS_CONFIG_FILE$; = $;OUTPUT_DIRECTORY$;/analysis.cfg
[component]
......@@ -48,6 +49,8 @@ $;ITERATOR1$; = i1
$;ITERATOR1_XML$; = $;DOCS_DIR$;/$;COMPONENT_NAME$;.$;ITERATOR1$;.xml
$;ITERATOR2$; = i2
$;ITERATOR2_XML$; = $;DOCS_DIR$;/$;COMPONENT_NAME$;.$;ITERATOR2$;.xml
$;ITERATOR3$; = i3
$;ITERATOR3_XML$; = $;DOCS_DIR$;/$;COMPONENT_NAME$;.$;ITERATOR3$;.xml
;Distributed options
$;GROUP_COUNT$; = 150
......
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