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genotoul-bioinfo
ng6
Commits
a3e88383
Commit
a3e88383
authored
Oct 09, 2019
by
ckuchly
Browse files
Add index files to saved files
parent
cba79771
Changes
1
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src/ng6/ng6workflow.py
View file @
a3e88383
...
...
@@ -686,7 +686,7 @@ class CasavaNG6Workflow(NG6Workflow):
# archive the files
#TODO : if self.group_prefix == None, the create the output of fastqilluminafilter in the run.get_work_directory()
saved_files
=
filtered_read1_files
+
filtered_read2_files
saved_files
=
filtered_read1_files
+
filtered_read2_files
+
self
.
get_all_reads
(
"index"
)
logging
.
getLogger
(
"CasavaNG6Workflow"
).
debug
(
"illumina_process saved_files = "
+
","
.
join
(
saved_files
))
reads_prefixes
=
None
if
self
.
group_prefix
!=
None
:
...
...
Claire Kuchly
@ckuchly
mentioned in issue
#133 (closed)
·
Oct 09, 2019
mentioned in issue
#133 (closed)
mentioned in issue #133
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