Commit a3e88383 authored by ckuchly's avatar ckuchly

Add index files to saved files

parent cba79771
......@@ -686,7 +686,7 @@ class CasavaNG6Workflow(NG6Workflow):
# archive the files
#TODO : if self.group_prefix == None, the create the output of fastqilluminafilter in the run.get_work_directory()
saved_files = filtered_read1_files + filtered_read2_files
saved_files = filtered_read1_files + filtered_read2_files + self.get_all_reads("index")
logging.getLogger("CasavaNG6Workflow").debug("illumina_process saved_files = " + ",".join(saved_files))
reads_prefixes = None
if self.group_prefix != None :
......
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