Commit 83a77159 authored by Penom Nom's avatar Penom Nom
Browse files

Exclude parameters.

parent e42d9f1a
......@@ -34,17 +34,21 @@ description = casava 1.8 quality check pipeline
casava_directory.name = casava_directory
casava_directory.flag = --casava-directory
casava_directory.help = Where are stored casava results (see also lane-number)
casava_directory.required = False
casava_directory.required = True
casava_directory.exclude = read_1
lane_number.name = lane_number
lane_number.flag = --lane-number
lane_number.help = Which lane should be processed (mandatory with casava-directory)
lane_number.required = False
lane_number.required = True
lane_number.exclude = read_1
read_1.name = read_1
read_1.flag = --read-1
read_1.help = Which read1 files should be used
read_1.action = append
read_1.required = True
read_1.exclude = casava_directory
read_2.name = read_2
read_2.flag = --read-2
......
......@@ -34,17 +34,21 @@ description = illumina quality check pipeline
casava_directory.name = casava_directory
casava_directory.flag = --casava-directory
casava_directory.help = Where are stored casava results (see also lane-number)
casava_directory.required = False
casava_directory.required = True
casava_directory.exclude = read_1
lane_number.name = lane_number
lane_number.flag = --lane-number
lane_number.help = Which lane should be processed (mandatory with casava-directory)
lane_number.required = False
lane_number.required = True
lane_number.exclude = read_1
read_1.name = read_1
read_1.flag = --read-1
read_1.help = Which read1 files should be used
read_1.action = append
read_1.required = True
read_1.exclude = casava_directory
read_2.name = read_2
read_2.flag = --read-2
......
......@@ -34,15 +34,21 @@ description = rnaseq quality check pipeline
casava_directory.name = casava_directory
casava_directory.flag = --casava-directory
casava_directory.help = Where are stored casava results (see also lane-number)
casava_directory.required = True
casava_directory.exclude = read_1
lane_number.name = lane_number
lane_number.flag = --lane-number
lane_number.help = Which lane should be processed (mandatory with casava-directory)
lane_number.required = True
lane_number.exclude = read_1
read_1.name = read_1
read_1.flag = --read-1
read_1.help = Which read1 files should be used
read_1.action = append
read_1.required = True
read_1.exclude = casava_directory
read_2.name = read_2
read_2.flag = --read-2
......
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