Commit 83580524 authored by Penom Nom's avatar Penom Nom
Browse files

Add data to test gene_diversity.

parent 79ee510e
......@@ -24,7 +24,7 @@ The gene diversity demonstration workflow.
--date
04/04/2014
--data-nature
gDNA
cDNA
--sequencer
MiSeq
--type
......@@ -32,14 +32,54 @@ MiSeq
--species
Bacteria
--read_1
workflows/gene_diversity/data/
workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/
workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/
workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/
workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R2.fastq.gz
--read_1
workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R1.fastq.gz
--read_2
workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R2.fastq.gz
--database
workflows/gene_diversity/data/database_dsrb.fasta
--taxonomy
workflows/gene_diversity/data/taxonomy_dsrB.tsv
\ No newline at end of file
workflows/gene_diversity/data/taxonomy_dsrB.tsv
--min-overlap
90
--max-overlap
150
--min-length
350
--max-length
410
--max-n
0
--otu-identity-threshold
0.97
\ No newline at end of file
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