Add data to test gene_diversity.

workflows/gene_diversity/data/gene_diversity.conf

@@ -24,7 +24,7 @@ The gene diversity demonstration workflow.
 --date
 04/04/2014
 --data-nature
-gDNA
+cDNA
 --sequencer
 MiSeq
 --type
@@ -32,14 +32,54 @@ MiSeq
 --species
 Bacteria
 --read_1
-workflows/gene_diversity/data/
+workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R1.fastq.gz
 --read_2
-workflows/gene_diversity/data/
+workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R2.fastq.gz
 --read_1
-workflows/gene_diversity/data/
+workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R1.fastq.gz
 --read_2
-workflows/gene_diversity/data/
+workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R2.fastq.gz
+--read_1
+workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R1.fastq.gz
+--read_2
+workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R2.fastq.gz
 --database
 workflows/gene_diversity/data/database_dsrb.fasta
 --taxonomy
-workflows/gene_diversity/data/taxonomy_dsrB.tsv
\ No newline at end of file
+workflows/gene_diversity/data/taxonomy_dsrB.tsv
+--min-overlap
+90
+--max-overlap
+150
+--min-length
+350
+--max-length
+410
+--max-n
+0
+--otu-identity-threshold
+0.97
\ No newline at end of file