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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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genotoul-bioinfo
ng6
Commits
7e1e62f0
Commit
7e1e62f0
authored
May 30, 2013
by
Jerome Mariette
Browse files
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parent
0e3436da
Changes
2
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ui/nG6/pi1/analyzes/BasicAnalyse.tpl
View file @
7e1e62f0
...
...
@@ -31,8 +31,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</div>
{/
block
}
{
block
name
=
content
}
<div
class=
"sub-content sc-bottom"
>
{
block
name
=
content
}
<ul
id=
"myTab"
class=
"nav nav-tabs"
>
<li
class=
"active"
><a
href=
"#results"
data-toggle=
"tab"
>
{
block
name
=
results_title
}
Results
{/
block
}
</a></li>
{
if
$analyse.params
!=
""
}
...
...
@@ -78,8 +78,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{/
block
}
</div>
</div>
{/
block
}
</div>
{/
block
}
{* Modal initialization *}
{* Global tmpl *}
...
...
ui/nG6/pi1/analyzes/MothurOTU.tpl
View file @
7e1e62f0
...
...
@@ -27,9 +27,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</ul>
{/
block
}
{
block
name
=
results_title
}
Alpha diversity
{/
block
}
{
block
name
=
results
}
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
{
block
name
=
content
}
{* First find out all levels used *}
{
assign
var
=
"levels"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -64,89 +63,131 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<input
type=
"hidden"
id=
"tre_jclass_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$analyse_results
[
"all"
][
$group
].
tre_jclass
}
"
/>
{/
foreach
}
{/
if
}
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<ul
id=
"myTab"
class=
"nav nav-tabs"
>
<li
class=
"active"
><a
href=
"#alpha"
data-toggle=
"tab"
>
Alpha diversity
</a></li>
{
if
$tree_avail
}
<li
class=
"active"
><a
href=
"#beta"
data-toggle=
"tab"
>
Alpha diversity
</a></li>
{/
if
}
<li><a
href=
"#parameters"
data-toggle=
"tab"
>
Parameters
</a></li>
<li><a
href=
"#downloads"
data-toggle=
"tab"
>
{
block
name
=
downloads_title
}
Downloads
{/
block
}
</a></li>
</ul>
<table
class=
"table table-striped table-bordered dataTable analysis-result-table"
>
<thead>
<tr>
<th
rowspan=
2
><center><input
type=
"checkbox"
id=
"chk_all_sample"
></center></th>
{
if
$analyse_results
|@
count
>
1
}
<th
rowspan=
2
>
Samples (
{
$analyse_results
|@
count
}
)
</th>
{
$beta_done
=
true
}
{/
if
}
<th
rowspan=
2
>
Number of sequences
</th>
{
foreach
$levels
as
$group
}
<th
colspan=
{
$estimators
|@
count
}
>
{
$group
}
</th
>
{/
foreach
}
</tr>
<tr>
{
foreach
$levels
as
$group
}
<th>
OTUs
</th>
{
foreach
$estimators
as
$estimator
}
{
if
$estimator
!=
"sobs"
}
<th>
{
$estimator
}
</th>
<div
id=
"myTabContent"
class=
"tab-content"
>
<div
class=
"tab-pane fade in active"
id=
"alpha"
>
<table
class=
"table table-striped table-bordered dataTable analysis-result-table"
>
<thead>
<tr>
<th
rowspan=
2
><center><input
type=
"checkbox"
id=
"chk_all_sample"
></center></th>
{
if
$analyse_results
|@
count
>
1
}
<th
rowspan=
2
>
Samples (
{
$analyse_results
|@
count
}
)
</th>
{
$beta_done
=
true
}
{/
if
}
{/
foreach
}
{/
foreach
}
</tr>
</thead>
<tbody>
{
assign
var
=
"analyse_results_sorted"
value
=
$analyse_results
|@
ksort
}
{
assign
var
=
"i"
value
=
0
}
{
foreach
from
=
$analyse_results_sorted
key
=
sample
item
=
sample_results
}
{
if
$sample
!=
"all"
}
<tr>
<td><center>
<input
type=
"checkbox"
id=
"chk_sample_
{
$i
}
"
value=
"sample"
>
<th
rowspan=
2
>
Number of sequences
</th>
{
foreach
$levels
as
$group
}
<th
colspan=
{
$estimators
|@
count
}
>
{
$group
}
</th
>
{/
foreach
}
</tr>
<tr>
{
foreach
$levels
as
$group
}
<input
type=
"hidden"
id=
"rarefaction_curve_x_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
rarefaction_x
}
"
/>
<input
type=
"hidden"
id=
"rarefaction_curve_y_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
rarefaction_y
}
"
/>
{
if
$sample_results
[
$group
].
otus
!=
""
}
<input
type=
"hidden"
id=
"otus_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
otus
}
"
/>
{/
if
}
<th>
OTUs
</th>
{
foreach
$estimators
as
$estimator
}
{
if
$estimator
!=
"sobs"
}
<th>
{
$estimator
}
</th>
{/
if
}
{/
foreach
}
{/
foreach
}
</center></td>
{
if
$analyse_results
|@
count
>
1
}
<td
id=
"sample_id_
{
$i
}
"
>
{
$sample
|
get_description
:
$descriptions
}
</td>
</tr>
</thead>
<tbody>
{
assign
var
=
"analyse_results_sorted"
value
=
$analyse_results
|@
ksort
}
{
assign
var
=
"i"
value
=
0
}
{
foreach
from
=
$analyse_results_sorted
key
=
sample
item
=
sample_results
}
{
if
$sample
!=
"all"
}
<tr>
<td><center>
<input
type=
"checkbox"
id=
"chk_sample_
{
$i
}
"
value=
"sample"
>
{
foreach
$levels
as
$group
}
<input
type=
"hidden"
id=
"rarefaction_curve_x_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
rarefaction_x
}
"
/>
<input
type=
"hidden"
id=
"rarefaction_curve_y_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
rarefaction_y
}
"
/>
{
if
$sample_results
[
$group
].
otus
!=
""
}
<input
type=
"hidden"
id=
"otus_
{
$i
}
_
{
$group
|
replace
:
"."
:
"_"
}
"
value=
"
{
$sample_results
[
$group
].
otus
}
"
/>
{/
if
}
{/
foreach
}
</center></td>
{
if
$analyse_results
|@
count
>
1
}
<td
id=
"sample_id_
{
$i
}
"
>
{
$sample
|
get_description
:
$descriptions
}
</td>
{/
if
}
<td>
{
$sample_results
[
"default"
][
"nb_seq"
]|
number_format
:
0
:
' '
:
' '
}
</td>
{
foreach
$levels
as
$group
}
<td><center>
{
$sample_results
[
$group
][
"sobs"
]|
number_format
:
0
:
' '
:
' '
}
</center></td>
{
foreach
$estimators
as
$estimator
}
{
if
$estimator
!=
"sobs"
}
{
assign
var
=
"display_value"
value
=
";"
|
explode
:
$sample_results
[
$group
][
$estimator
]
}
{
if
$display_value
|@
count
==
3
}
<td
nowrap=
"nowrap"
><center>
{
$display_value
[
0
]|
number_format
:
2
:
'.'
:
' '
}
<br
/>
(
{
$display_value
[
1
]|
number_format
:
2
:
'.'
:
' '
}
:
{
$display_value
[
2
]|
number_format
:
2
:
'.'
:
' '
}
)
</center></td>
{
else
}
<td
nowrap=
"nowrap"
><center>
{
$sample_results
[
$group
][
$estimator
]|
number_format
:
2
:
'.'
:
' '
}
</center></td>
{/
if
}
{/
if
}
{/
foreach
}
{/
foreach
}
</tr>
{
$i
=
$i
+
1
}
{/
if
}
<td>
{
$sample_results
[
"default"
][
"nb_seq"
]|
number_format
:
0
:
' '
:
' '
}
</td>
{
foreach
$levels
as
$group
}
<td><center>
{
$sample_results
[
$group
][
"sobs"
]|
number_format
:
0
:
' '
:
' '
}
</center></td
>
{
foreach
$estimators
as
$estimator
}
{
if
$estimator
!=
"sobs"
}
{
assign
var
=
"display_value"
value
=
";"
|
explode
:
$sample_results
[
$group
][
$estimator
]
}
{
if
$
display_value
|@
count
==
3
}
<td
nowrap=
"nowrap"
><center>
{
$display_value
[
0
]|
number_format
:
2
:
'.'
:
' '
}
<br
/>
(
{
$display_value
[
1
]|
number_format
:
2
:
'.'
:
' '
}
:
{
$display_value
[
2
]|
number_format
:
2
:
'.'
:
' '
}
)
</center></td
>
{
else
}
<td
nowrap=
"nowrap"
><center>
{
$sample_results
[
$group
][
$estimator
]|
number_format
:
2
:
'.'
:
' '
}
</center></td>
{/
if
}
{/
foreach
}
</tbody>
<tfoot
>
<tr>
<th
align=
"left"
colspan=
"10"
>
With selection :
{
if
$
beta_done
}
<button
type=
"button"
class=
"btn btn-small rarefaction-line-view-btn single-selection-btn"
><i
class=
" icon-signal"
></i>
Rarefaction curves
</button
>
<button
type=
"button"
class=
"btn btn-small venn-view-btn multiple-selection-btn"
><i
class=
" icon-search"
></i>
Venn diagram
</button>
{
else
}
<button
type=
"button"
class=
"btn btn-small rarefaction-line-view-btn single-selection-btn"
><i
class=
" icon-signal"
></i>
Rarefaction curves
</button>
{/
if
}
</th>
</tr>
</tfoot>
</table>
</div>
{
if
$tree_avail
}
<div
class=
"tab-pane fade in active"
id=
"beta"
>
<div
id=
"svgCanvas"
></div>
</div>
{/
if
}
<div
class=
"tab-pane fade"
id=
"parameters"
>
{
block
name
=
params
}
{
block
name
=
params_content
}
<ul>
<li
class=
"parameter"
>
{
$analyse.params
}
</li>
</ul>
{/
block
}
{/
block
}
</div>
<div
class=
"tab-pane fade"
id=
"downloads"
>
{
block
name
=
download
}
{
if
$nb_files
!=
0
}
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
assign
var
=
"nb_files"
value
=
0
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li
class=
"filelist"
><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{
$nb_files
=
$nb_files
+
1
}
{/
if
}
{/
foreach
}
{/
foreach
}
</tr>
{
$i
=
$i
+
1
}
{/
if
}
{/
foreach
}
</tbody>
<tfoot>
<tr>
<th
align=
"left"
colspan=
"10"
>
With selection :
{
if
$beta_done
}
<button
type=
"button"
class=
"btn btn-small rarefaction-line-view-btn single-selection-btn"
><i
class=
" icon-signal"
></i>
Rarefaction curves
</button>
<button
type=
"button"
class=
"btn btn-small venn-view-btn multiple-selection-btn"
><i
class=
" icon-search"
></i>
Venn diagram
</button>
{
else
}
<button
type=
"button"
class=
"btn btn-small rarefaction-line-view-btn single-selection-btn"
><i
class=
" icon-signal"
></i>
Rarefaction curves
</button>
{/
if
}
</th>
</tr>
</tfoot>
</table>
{
if
$tree_avail
}
<h3>
Beta diversity analysis results
</h3>
<div
class=
"underline"
>
</div>
<br
/>
<div
id=
"svgCanvas"
></div>
{/
if
}
</ul></p>
{
else
}
<div
class=
"alert alert-info"
>
Results folder not synchronized yet...
</div>
{/
if
}
{/
block
}
</div>
</div>
{/
block
}
\ No newline at end of file
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