self.add_parameter("nb_threads","Number of threads to use for fastqc. Each thread will be allocated 250MB of memory.",default=3)
self.add_parameter("min_subreads_length","Subreads shorter than this value (in base pairs) are filtered out and excluded from analysis",default=0,type='int')
self.add_parameter("CCS_min_reads_length","Subreads shorter than this value (in base pairs) are filtered out and excluded from CCS analysis",default=0,type='int')
self.add_parameter("CCS_min_passes","Minimum of passes for CSS analys",default=3,type='int')
self.add_parameter("polymerase_read_qual","Polymerase reads with lower quality than this value are filtered out and excluded from analysis",default=0,type='float')
self.add_parameter("polymerase_read_length","Polymerase reads shorter than this value (in base pairs) are filtered out and excluded from analysis",default=0,type='int')
...
...
@@ -47,9 +47,9 @@ class SequelQualityCheck (NG6Workflow):