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genotoul-bioinfo
ng6
Commits
7166d0a4
Commit
7166d0a4
authored
Sep 18, 2019
by
Maxime Manno
🍜
Browse files
Prepare init to add the demultiplex ONT stats analysis
parent
771e3ab8
Changes
1
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Inline
Side-by-side
workflows/ont_qc/__init__.py
View file @
7166d0a4
...
...
@@ -39,7 +39,7 @@ class OntQualityCheck (NG6Workflow):
self
.
add_parameter
(
"compression"
,
"How should the data be compressed once archived"
,
choices
=
[
"none"
,
"gz"
,
"bz2"
],
default
=
"gz"
)
self
.
add_parameter
(
"trimming"
,
"use trimming with porechop or not"
,
choices
=
[
"yes"
,
"no"
],
default
=
"no"
)
self
.
add_input_file
(
"summary_file"
,
"Input summary basecalling file"
,
default
=
None
)
self
.
add_parameter
(
"barcoded"
,
"If barcoded run :
correspondance file
"
,
default
=
None
)
self
.
add_parameter
(
"barcoded"
,
"If barcoded run :
yes
"
,
default
=
"no"
)
self
.
add_parameter
(
"fast5dir"
,
"path of the fast5 directory"
,
default
=
None
)
def
process
(
self
):
...
...
Maxime Manno
🍜
@mmanno
·
Sep 18, 2019
Author
Maintainer
related to
#112 (closed)
related to #112
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