add user handling from ergatis

7111b8d3 · Jerome Mariette · 37dabe94 · 7111b8d3 · 37dabe94 · 7111b8d3
Commit 7111b8d3 authored Sep 05, 2012 by Jerome Mariette
--- a/454/bin/config_run_newbler.py
+++ b/454/bin/config_run_newbler.py
@@ -37,11 +37,9 @@ if __name__ == '__main__':
    # Define input options
    igroup = OptionGroup(parser, "Input options","")
    igroup.add_option("-a", "--date",                 help="The run date in dd/mm/yyyy format.",                  dest="date",                 type="string")
-    igroup.add_option("-b", "--fe-group-parent",      help="The project fe group parent name.",                   dest="fe_group_parent",      type="string")
    igroup.add_option("-d", "--description",          help="Run description.",                                    dest="description",          type="string") 
    igroup.add_option("-e", "--name",                 help="The run name.",                                       dest="name",                 type="string")
-    igroup.add_option("-g", "--fe-group",             help="The project fe group name allowed for this project.", dest="fe_group",             type="string")
-    igroup.add_option("-i", "--fe-group-description", help="The project fe group description.",                   dest="fe_group_description", type="string")
+    igroup.add_option("-g", "--admin-login",          help="The project administrator login.",                    dest="admin_login",          type="string")
    igroup.add_option("-n", "--data_nature",          help="The nature of the data.",                             dest="data_nature",          type="string")  
    igroup.add_option("-p", "--project-description",  help="The project description the run belongs to.",         dest="project_description",  type="string")
    igroup.add_option("-q", "--sequencer",            help="The sequencer name used.",                            dest="sequencer",            type="string")
@@ -64,8 +62,7 @@ if __name__ == '__main__':
        sys.exit(1)
    else :
        # Create a project and run object
-        my_project = Project(options.project_name, options.project_description, options.fe_group,
-                             options.fe_group_description, options.fe_group_parent)
+        my_project = Project(options.project_name, options.project_description, options.admin_login)
        
        run_date = options.date.split("/")
        my_run = Run(options.name, datetime.date(int(run_date[2]), int(run_date[1]), int(run_date[0])), 

--- a/454/templates/454_cnrgv/config_run.raw_input.config
+++ b/454/templates/454_cnrgv/config_run.raw_input.config
-[interface]
-classification = ng6
-
-[parameters]
-;; The run name.
-$;RUN_NAME$;=
-;; The run date in dd/mm/yyyy format.
-$;DATE$;=
-;; The species used for this run.
-$;SPECIES$;=
-;; The nature of the data.
-$;DATA_NATURE$;=
-;; The type of run done.
-$;RUN_TYPE$;=
-;; Run description.
-$;RUN_DESCRIPTION$;=
-;; The sequencer name used.
-$;SEQUENCER$;=454 GS FLX Titanium
-;; The project name the run belongs to. If the project already exists, the description and front end group is not required.
-$;PROJECT_NAME$;=TESTBACS
-;; The project description the run belongs to.
-$;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
-
-[input]
-;; The raw input to use
-$;RAW_INPUT$; =
-;; The path to the control fasta file, if not set no control analyze will be possible.
-$;INPUT_FASTA_CONTROL_FILE$;=
-;; The path to the control qual file, if not set no control analyze will be possible.
-$;INPUT_QUAL_CONTROL_FILE$;=
-;; The path to the mids description file, if no mids has been used in this run, left it unset.
-$;INPUT_MIDS_DESCRIPTION_FILE$;=
-
-[output]
-$;OUTPUT_TOKEN$;=raw_input
-$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-;; The raw input to use
-$;RAW_LIST$;=$;OUTPUT_DIRECTORY$;/run.raw.list
-$;CONFIG_FILE$;=$;OUTPUT_DIRECTORY$;/run.cfg
-$;FASTA_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.fasta.list
-$;QUAL_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.qual.list
-
-[component]
-$;COMPONENT_NAME$;=config_run
-$;DESCRIPTION$;=This script is part of the ng6 project,  it creates the run config file required by all ng6 scripts 
-$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-$;PIPELINE_TOKEN$;=unnamed
-
-;The version,revision,tag here is set by an interpolated CVS tag
-$;VERSION$;=$Name$
-$;RELEASE_TAG$;=$Name$
-$;REVISION$;=$Revision: 5503 $
-$;TEMPLATE_XML$;=$;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
-
-;the following keys are replaced at runtime by the invocation script
-$;COMPONENT_CONFIG$;=
-$;COMPONENT_XML$;=
-$;PIPELINE_XML$;=
-$;PIPELINEID$;=
-
-[include]
-$;PROJECT_CONFIG$;=
--- a/454/templates/454_cnrgv/config_run_newbler.raw_input.config
+++ b/454/templates/454_cnrgv/config_run_newbler.raw_input.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$;=TESTBACS
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/templates/454_default/config_run.raw_input.config
+++ b/454/templates/454_default/config_run.raw_input.config
-[interface]
-classification = ng6
-
-[parameters]
-;; The run name.
-$;RUN_NAME$;=
-;; The run date in dd/mm/yyyy format.
-$;DATE$;=
-;; The species used for this run.
-$;SPECIES$;=
-;; The nature of the data.
-$;DATA_NATURE$;=
-;; The type of run done.
-$;RUN_TYPE$;=
-;; Run description.
-$;RUN_DESCRIPTION$;=
-;; The sequencer name used.
-$;SEQUENCER$;=454 GS FLX Titanium
-;; The project name the run belongs to. If the project already exists, the description and front end group is not required.
-$;PROJECT_NAME$;=
-;; The project description the run belongs to.
-$;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
-
-[input]
-;; The raw input to use
-$;RAW_INPUT$;=
-;; The path to the control fasta file, if not set no control analyze will be possible.
-$;INPUT_FASTA_CONTROL_FILE$;=
-;; The path to the control qual file, if not set no control analyze will be possible.
-$;INPUT_QUAL_CONTROL_FILE$;=
-;; The path to the mids description file, if no mids has been used in this run, left it unset.
-$;INPUT_MIDS_DESCRIPTION_FILE$;=
-
-[output]
-$;OUTPUT_TOKEN$;=raw_input
-$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-;; The raw input to use
-$;RAW_LIST$;=$;OUTPUT_DIRECTORY$;/run.raw.list
-$;CONFIG_FILE$;=$;OUTPUT_DIRECTORY$;/run.cfg
-$;FASTA_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.fasta.list
-$;QUAL_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.qual.list
-
-[component]
-$;COMPONENT_NAME$;=config_run
-$;DESCRIPTION$;=This script is part of the ng6 project,  it creates the run config file required by all ng6 scripts 
-$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-$;PIPELINE_TOKEN$;=unnamed
-
-;The version,revision,tag here is set by an interpolated CVS tag
-$;VERSION$;=$Name$
-$;RELEASE_TAG$;=$Name$
-$;REVISION$;=$Revision: 5503 $
-$;TEMPLATE_XML$;=$;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
-
-;the following keys are replaced at runtime by the invocation script
-$;COMPONENT_CONFIG$;=
-$;COMPONENT_XML$;=
-$;PIPELINE_XML$;=
-$;PIPELINEID$;=
-
-[include]
-$;PROJECT_CONFIG$;=
--- a/454/templates/454_default/config_run_newbler.raw_input.config
+++ b/454/templates/454_default/config_run_newbler.raw_input.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$;=
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/templates/454_fastq/config_run.raw_input.config
+++ b/454/templates/454_fastq/config_run.raw_input.config
-[interface]
-classification = ng6
-
-[parameters]
-;; The run name.
-$;RUN_NAME$;=
-;; The run date in dd/mm/yyyy format.
-$;DATE$;=
-;; The species used for this run.
-$;SPECIES$;=
-;; The nature of the data.
-$;DATA_NATURE$;=
-;; The type of run done.
-$;RUN_TYPE$;=
-;; Run description.
-$;RUN_DESCRIPTION$;=
-;; The sequencer name used.
-$;SEQUENCER$;=454 GS FLX Titanium
-;; The project name the run belongs to. If the project already exists, the description and front end group is not required.
-$;PROJECT_NAME$;=
-;; The project description the run belongs to.
-$;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
-
-[input]
-;; The raw input to use
-$;RAW_INPUT$;=
-;; The path to the control fasta file, if not set no control analyze will be possible.
-$;INPUT_FASTA_CONTROL_FILE$;=
-;; The path to the control qual file, if not set no control analyze will be possible.
-$;INPUT_QUAL_CONTROL_FILE$;=
-;; The path to the mids description file, if no mids has been used in this run, left it unset.
-$;INPUT_MIDS_DESCRIPTION_FILE$;=
-
-[output]
-$;OUTPUT_TOKEN$;=raw_input
-$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-;; The raw input to use
-$;RAW_LIST$;=$;OUTPUT_DIRECTORY$;/run.raw.list
-$;CONFIG_FILE$;=$;OUTPUT_DIRECTORY$;/run.cfg
-$;FASTA_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.fasta.list
-$;QUAL_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.qual.list
-
-[component]
-$;COMPONENT_NAME$;=config_run
-$;DESCRIPTION$;=This script is part of the ng6 project,  it creates the run config file required by all ng6 scripts 
-$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-$;PIPELINE_TOKEN$;=unnamed
-
-;The version,revision,tag here is set by an interpolated CVS tag
-$;VERSION$;=$Name$
-$;RELEASE_TAG$;=$Name$
-$;REVISION$;=$Revision: 5503 $
-$;TEMPLATE_XML$;=$;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
-
-;the following keys are replaced at runtime by the invocation script
-$;COMPONENT_CONFIG$;=
-$;COMPONENT_XML$;=
-$;PIPELINE_XML$;=
-$;PIPELINEID$;=
-
-[include]
-$;PROJECT_CONFIG$;=
--- a/454/templates/454_fastq/config_run_newbler.raw_input.config
+++ b/454/templates/454_fastq/config_run_newbler.raw_input.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$;=
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/templates/454_mids_default/config_run.raw_input.config
+++ b/454/templates/454_mids_default/config_run.raw_input.config
-[interface]
-classification = ng6
-
-[parameters]
-;; The run name.
-$;RUN_NAME$;=
-;; The run date in dd/mm/yyyy format.
-$;DATE$;=
-;; The species used for this run.
-$;SPECIES$;=
-;; The nature of the data.
-$;DATA_NATURE$;=
-;; The type of run done.
-$;RUN_TYPE$;=
-;; Run description.
-$;RUN_DESCRIPTION$;=
-;; The sequencer name used.
-$;SEQUENCER$;=454 GS FLX Titanium
-;; The project name the run belongs to. If the project already exists, the description and front end group is not required.
-$;PROJECT_NAME$;=
-;; The project description the run belongs to.
-$;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
-
-[input]
-;; The raw input to use
-$;RAW_INPUT$;=
-;; The path to the control fasta file, if not set no control analyze will be possible.
-$;INPUT_FASTA_CONTROL_FILE$;=
-;; The path to the control qual file, if not set no control analyze will be possible.
-$;INPUT_QUAL_CONTROL_FILE$;=
-;; The path to the mids description file, if no mids has been used in this run, left it unset.
-$;INPUT_MIDS_DESCRIPTION_FILE$;=
-
-[output]
-$;OUTPUT_TOKEN$;=raw_input
-$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-;; The raw input to use
-$;RAW_LIST$;=$;OUTPUT_DIRECTORY$;/run.raw.list
-$;CONFIG_FILE$;=$;OUTPUT_DIRECTORY$;/run.cfg
-$;FASTA_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.fasta.list
-$;QUAL_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.qual.list
-
-[component]
-$;COMPONENT_NAME$;=config_run
-$;DESCRIPTION$;=This script is part of the ng6 project,  it creates the run config file required by all ng6 scripts 
-$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-$;PIPELINE_TOKEN$;=unnamed
-
-;The version,revision,tag here is set by an interpolated CVS tag
-$;VERSION$;=$Name$
-$;RELEASE_TAG$;=$Name$
-$;REVISION$;=$Revision: 5503 $
-$;TEMPLATE_XML$;=$;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
-
-;the following keys are replaced at runtime by the invocation script
-$;COMPONENT_CONFIG$;=
-$;COMPONENT_XML$;=
-$;PIPELINE_XML$;=
-$;PIPELINEID$;=
-
-[include]
-$;PROJECT_CONFIG$;=
--- a/454/templates/454_mids_default/config_run_newbler.raw_input.config
+++ b/454/templates/454_mids_default/config_run_newbler.raw_input.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$;=
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/templates/454_mise/config_run.raw_input.config
+++ b/454/templates/454_mise/config_run.raw_input.config
-[interface]
-classification = ng6
-
-[parameters]
-;; The run name.
-$;RUN_NAME$;=
-;; The run date in dd/mm/yyyy format.
-$;DATE$;=
-;; The species used for this run.
-$;SPECIES$;=
-;; The nature of the data.
-$;DATA_NATURE$;=
-;; The type of run done.
-$;RUN_TYPE$;=
-;; Run description.
-$;RUN_DESCRIPTION$;=
-;; The sequencer name used.
-$;SEQUENCER$;=454 GS FLX Titanium
-;; The project name the run belongs to. If the project already exists, the description and front end group is not required.
-$;PROJECT_NAME$;=MISE
-;; The project description the run belongs to.
-$;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
-
-[input]
-;; The raw input to use
-$;RAW_INPUT$; =
-;; The path to the control fasta file, if not set no control analyze will be possible.
-$;INPUT_FASTA_CONTROL_FILE$;=
-;; The path to the control qual file, if not set no control analyze will be possible.
-$;INPUT_QUAL_CONTROL_FILE$;=
-;; The path to the mids description file, if no mids has been used in this run, left it unset.
-$;INPUT_MIDS_DESCRIPTION_FILE$;=
-
-[output]
-$;OUTPUT_TOKEN$;=raw_input
-$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-;; The raw input to use
-$;RAW_LIST$;=$;OUTPUT_DIRECTORY$;/run.raw.list
-$;CONFIG_FILE$;=$;OUTPUT_DIRECTORY$;/run.cfg
-$;FASTA_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.fasta.list
-$;QUAL_CONTROL_LIST$;=$;OUTPUT_DIRECTORY$;/run_control.qual.list
-
-[component]
-$;COMPONENT_NAME$;=config_run
-$;DESCRIPTION$;=This script is part of the ng6 project,  it creates the run config file required by all ng6 scripts 
-$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
-$;PIPELINE_TOKEN$;=unnamed
-
-;The version,revision,tag here is set by an interpolated CVS tag
-$;VERSION$;=$Name$
-$;RELEASE_TAG$;=$Name$
-$;REVISION$;=$Revision: 5503 $
-$;TEMPLATE_XML$;=$;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
-
-;the following keys are replaced at runtime by the invocation script
-$;COMPONENT_CONFIG$;=
-$;COMPONENT_XML$;=
-$;PIPELINE_XML$;=
-$;PIPELINEID$;=
-
-[include]
-$;PROJECT_CONFIG$;=
--- a/454/templates/454_mise/config_run_newbler.raw_input.config
+++ b/454/templates/454_mise/config_run_newbler.raw_input.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$;=MISE
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$;=
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$;=
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$;=
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$;=
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/wfcomponent/config_run_newbler.config
+++ b/454/wfcomponent/config_run_newbler.config
@@ -24,12 +24,8 @@ $;DEMULTIPLEXING_ERROR$; = 0
 $;PROJECT_NAME$; = 
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$; =
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$; =
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$; =
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$; =
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/454/wfcomponent/config_run_newbler.xml
+++ b/454/wfcomponent/config_run_newbler.xml
@@ -70,16 +70,8 @@
                <value>"$;PROJECT_DESCRIPTION$;"</value>
            </param>
            <param>
-                <key>--fe-group-parent</key>
-                <value>"$;PROJECT_FE_GROUP_PARENT$;"</value>
-            </param>
-            <param>
-                <key>--fe-group-description</key>
-                <value>"$;PROJECT_FE_GROUP_DESCRIPTION$;"</value>
-            </param>
-            <param>
-                <key>--fe-group</key>
-                <value>"$;PROJECT_FE_GROUP$;"</value>
+                <key>--admin-login</key>
+                <value>"$;ADMIN_LOGIN$;"</value>
            </param>
            <param>
                <key>--date</key>

--- a/454/wfcomponent/documentation/config_run_newbler.tmpl
+++ b/454/wfcomponent/documentation/config_run_newbler.tmpl
@@ -33,8 +33,6 @@
    <li>mids description: The mids descriptions (MID1:desc1;MID2:desc2;... can also be MID1,MID2:desc;...). Leave it blank if it's not a multiplexed run.</li>
    <li>project name: the project name the run belongs to.</li>
    <li>project description: the project description the run belongs to.</li>
-    <li>project fe group: the project fe group name allowed for this project.</li>
-    <li>fe group description: the project fe group description.</li>
-    <li>fe group parent: the project fe group parent name.</li>
+    <li>admin login: the project administrator login.</li>
 </ul>
 </p>
\ No newline at end of file
--- a/core/bin/config_run.py
+++ b/core/bin/config_run.py
@@ -36,11 +36,9 @@ if __name__ == '__main__':
    # Define input options
    igroup = OptionGroup(parser, "Input options","")
    igroup.add_option("-a", "--date",                 help="The run date in dd/mm/yyyy format.",                  dest="date",                 type="string")
-    igroup.add_option("-b", "--fe-group-parent",      help="The project fe group parent name.",                   dest="fe_group_parent",      type="string")
    igroup.add_option("-d", "--description",          help="Run description.",                                    dest="description",          type="string") 
    igroup.add_option("-e", "--name",                 help="The run name.",                                       dest="name",                 type="string")
-    igroup.add_option("-g", "--fe-group",             help="The project fe group name allowed for this project.", dest="fe_group",             type="string")
-    igroup.add_option("-i", "--fe-group-description", help="The project fe group description.",                   dest="fe_group_description", type="string")
+    igroup.add_option("-g", "--admin-login",          help="The project administrator login.",                    dest="admin_login",          type="string")
    igroup.add_option("-n", "--data_nature",          help="The nature of the data.",                             dest="data_nature",          type="string")  
    igroup.add_option("-p", "--project-description",  help="The project description the run belongs to.",         dest="project_description",  type="string")
    igroup.add_option("-q", "--sequencer",            help="The sequencer name used.",                            dest="sequencer",            type="string")
@@ -60,8 +58,7 @@ if __name__ == '__main__':
        sys.exit(1)
    else :
        # Create a project and run object
-        my_project = Project(options.project_name, options.project_description, options.fe_group,
-                             options.fe_group_description, options.fe_group_parent)
+        my_project = Project(options.project_name, options.project_description, options.admin_login)
        
        run_date = options.date.split("/")
        my_run = Run(options.name, datetime.date(int(run_date[2]), int(run_date[1]), int(run_date[0])), 

--- a/core/ng6/Project.py
+++ b/core/ng6/Project.py
@@ -35,19 +35,17 @@ class Project(object):
    Class Project: Define a nG6 Project object
    """

-    def __init__(self, name, description, fe_group="my_group", fe_group_description="", fe_group_parent="", id=None):
+    def __init__(self, name, description, admin_login, id=None):
        """
        Build a Project object
          @param name                  : the project name
          @param description           : the project description
-          @param fe_group              : the project front end group name
-          @param fe_group_description  : the project front end group description
-          @param fe_group_parent       : the project front end group parent name
+          @param admin_login           : the administrator login
          @param id                    : the project id
        """
        if id == None : # If brand new run
            t3mysql = t3MySQLdb()
-            self.id = t3mysql.add_project(name, description, fe_group, fe_group_description, fe_group_parent)
+            self.id = t3mysql.add_project(name, description, admin_login)
        else :
            self.id = id
        self.name = name

--- a/core/ng6/t3MySQLdb.py
+++ b/core/ng6/t3MySQLdb.py
@@ -55,15 +55,13 @@ class t3MySQLdb(object):
    #--------------------------------------------------------------------
    # Project functions

-    def add_project(self, name, pdescription, fe_group, fe_group_description, fe_group_parent, hidden=1):
+    def add_project(self, name, pdescription, admin_login, hidden=1):
        """
        Add to the database a new Project
          @return                     : the Project ID added
          @param name                 : the project name
          @param pdescription         : the project description
-          @param fe_groups            : group name involved in the project
-          @param fe_group_description : group description
-          @param fe_group_parent      : name of the parent group of this group
+          @param admin_login          : the administrator login
          @param hidden               : is the project hidden
        """
        conn = connect(self.host, self.user, self.passwd, self.db)

--- a/core/wfcomponent/config_run.config
+++ b/core/wfcomponent/config_run.config
@@ -20,12 +20,8 @@ $;SEQUENCER$; =
 $;PROJECT_NAME$; = 
 ;; The project description the run belongs to.
 $;PROJECT_DESCRIPTION$; =
-;; The project fe group name allowed for this project. If it doesn't exist it will be created.
-$;PROJECT_FE_GROUP$; =
-;; The project fe group description.
-$;PROJECT_FE_GROUP_DESCRIPTION$; =
-;; The project fe group parent name.
-$;PROJECT_FE_GROUP_PARENT$; =
+;; The project administrator login
+$;ADMIN_LOGIN$; =

 [input]
 ;; The raw input to use

--- a/core/wfcomponent/config_run.xml
+++ b/core/wfcomponent/config_run.xml
@@ -56,16 +56,8 @@
                <value>"$;PROJECT_DESCRIPTION$;"</value>
            </param>
            <param>
-                <key>--fe-group-parent</key>
-                <value>"$;PROJECT_FE_GROUP_PARENT$;"</value>
-            </param>