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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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genotoul-bioinfo
ng6
Commits
70fd459f
Commit
70fd459f
authored
Oct 10, 2013
by
Penom Nom
Browse files
Exclude parameters.
parent
83a77159
Changes
2
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workflows/methylseq/workflow.properties
View file @
70fd459f
...
...
@@ -34,15 +34,21 @@ description = bismark pipeline (cleaning and process)
casava_directory.name
=
casava_directory
casava_directory.flag
=
--casava-directory
casava_directory.help
=
Where are stored casava results (see also lane-number)
casava_directory.required
=
True
casava_directory.exclude
=
read_1
lane_number.name
=
lane_number
lane_number.flag
=
--lane-number
lane_number.help
=
Which lane should be processed (mandatory with casava-directory)
lane_number.required
=
True
lane_number.exclude
=
read_1
read_1.name
=
read_1
read_1.flag
=
--read-1
read_1.help
=
Which read1 files should be used
read_1.action
=
append
read_1.required
=
True
read_1.exclude
=
casava_directory
read_2.name
=
read_2
read_2.flag
=
--read-2
...
...
workflows/miseq_diversity/workflow.properties
View file @
70fd459f
...
...
@@ -34,17 +34,21 @@ description = illumina MiSeq pipeline to asses diversity
casava_directory.name
=
casava_directory
casava_directory.flag
=
--casava-directory
casava_directory.help
=
Where are stored casava results (see also lane-number)
casava_directory.required
=
False
casava_directory.required
=
True
casava_directory.exclude
=
read_1
lane_number.name
=
lane_number
lane_number.flag
=
--lane-number
lane_number.help
=
Which lane should be processed (mandatory with casava-directory)
lane_number.required
=
False
lane_number.required
=
True
lane_number.exclude
=
read_1
read1_files.name
=
read_1
read1_files.flag
=
--read-1
read1_files.help
=
Read1
read1_files.action
=
append
read1_files.required
=
True
read1_files.exclude
=
casava_directory
read2_files.name
=
read_2
read2_files.flag
=
--read-2
...
...
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