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Commit 6f225cb0 authored by Jerome Mariette's avatar Jerome Mariette
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bin/index.html 0 → 100644
View file @ 6f225cb0
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Jflow - Test page</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
<!-- Le styles -->
<link href="http://twitter.github.com/bootstrap/assets/css/bootstrap.css" rel="stylesheet">
<style type="text/css">
body {
padding-top: 60px;
padding-bottom: 40px;
}
</style>
<link href="http://twitter.github.com/bootstrap/assets/css/bootstrap-responsive.css" rel="stylesheet">
<!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
<!--[if lt IE 9]>
<script src="../assets/js/html5shiv.js"></script>
<![endif]-->
<!-- Fav and touch icons -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="../assets/ico/apple-touch-icon-144-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="../assets/ico/apple-touch-icon-114-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="../assets/ico/apple-touch-icon-72-precomposed.png">
<link rel="apple-touch-icon-precomposed" href="../assets/ico/apple-touch-icon-57-precomposed.png">
<link rel="shortcut icon" href="../assets/ico/favicon.png">
</head>
<body>
<div class="navbar navbar-inverse navbar-fixed-top">
<div class="navbar-inner">
<div class="container">
<button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="brand" href="#">Jflow</a>
<div class="nav-collapse collapse">
<ul class="nav">
<li class="active"><a href="#">Home</a></li>
<li><a href="#about">About</a></li>
<li><a href="#contact">Contact</a></li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Dropdown <b class="caret"></b></a>
<ul class="dropdown-menu">
<li><a href="#">Action</a></li>
<li><a href="#">Another action</a></li>
<li><a href="#">Something else here</a></li>
<li class="divider"></li>
<li class="nav-header">Nav header</li>
<li><a href="#">Separated link</a></li>
<li><a href="#">One more separated link</a></li>
</ul>
</li>
</ul>
</div><!--/.nav-collapse -->
</div>
</div>
</div>
<div class="container">
<!-- Main hero unit for a primary marketing message or call to action -->
<div class="hero-unit">
<h1>Hello, world!</h1>
<p>This is a template for a simple marketing or informational website. It includes a large callout called the hero unit and three supporting pieces of content. Use it as a starting point to create something more unique.</p>
<p><a href="#" class="btn btn-primary btn-large">Learn more &raquo;</a></p>
</div>
<!-- Example row of columns -->
<div class="row">
<div class="span4">
<h2>Heading</h2>
<p>Donec id elit non mi porta gravida at eget metus. Fusce dapibus, tellus ac cursus commodo, tortor mauris condimentum nibh, ut fermentum massa justo sit amet risus. Etiam porta sem malesuada magna mollis euismod. Donec sed odio dui. </p>
<p><a class="btn" href="#">View details &raquo;</a></p>
</div>
<div class="span4">
<h2>Heading</h2>
<p>Donec id elit non mi porta gravida at eget metus. Fusce dapibus, tellus ac cursus commodo, tortor mauris condimentum nibh, ut fermentum massa justo sit amet risus. Etiam porta sem malesuada magna mollis euismod. Donec sed odio dui. </p>
<p><a class="btn" href="#">View details &raquo;</a></p>
</div>
<div class="span4">
<h2>Heading</h2>
<p>Donec sed odio dui. Cras justo odio, dapibus ac facilisis in, egestas eget quam. Vestibulum id ligula porta felis euismod semper. Fusce dapibus, tellus ac cursus commodo, tortor mauris condimentum nibh, ut fermentum massa justo sit amet risus.</p>
<p><a class="btn" href="#">View details &raquo;</a></p>
</div>
</div>
<div id="target"></div>
<div id="target2"></div>
<div id="target3"></div>
<hr>
<footer>
<p>&copy; Company 2013</p>
</footer>
</div> <!-- /container -->
<!-- Le javascript
================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src='http://code.jquery.com/jquery.min.js' type='text/javascript'></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-transition.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-alert.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-modal.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-dropdown.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-scrollspy.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-tab.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-tooltip.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-popover.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-button.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-collapse.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-carousel.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-typeahead.js"></script>
<script src="http://twitter.github.com/bootstrap/assets/js/bootstrap-affix.js"></script>
<script src='jquery.tmpl.min.js' type='text/javascript'></script>
<script src='jflow.js' type='text/javascript'></script>
<script type='text/javascript'>
$(document).ready(function(){
$("#target").jflow({
jflowServerWebPath: "http://localhost:8080",
template: "workflowForm",
workflow_class: "R454"
});
});
</script>
</body>
</html>
\ No newline at end of file
bin/jflow.js 0 → 100644
View file @ 6f225cb0
/***************************************************************
* Copyright notice
*
* (c) 2013 PF bioinformatique de Toulouse
* All rights reserved
*
* It is distributed under the terms of the GNU General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* The GNU General Public License can be found at
* http://www.gnu.org/copyleft/gpl.html.
*
* This script is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* This copyright notice MUST APPEAR in all copies of the script!
***************************************************************/
(function($) {
$.fn.jflow = function(options) {
var JFLOW_CONTAINER_PREFIX = "jflow_container_";
var defaults = {
jflowServerWebPath: "http://localhost:8080",
template: "workflowsList",
workflow_class: null,
workflowsList: ['{{each(index, workflow) workflows}}',
'<blockquote>',
'<p>${workflow.name}</p>',
'<small>${workflow.help}</small>',
'</blockquote>',
'{{/each}}'].join('\n'),
workflowForm: ['<form class="form-horizontal">',
'<fieldset>',
' <div id="legend" class="">',
' <legend class="">${workflow.name} <small>${workflow.help}</small></legend>',
' </div>',
' {{each(index, param) workflow.parameters}}',
' <div class="control-group">',
' <label class="control-label">${param.name}</label>',
' <div class="controls">',
// if it's a multiple choice parameter, add a select
' {{if param.choices}}',
' <select class="input-xlarge">',
' {{each(j, choice) param.choices}}',
' {{if choice == param.default}}',
' <option selected>${choice}</option>',
' {{else}}',
' <option>${choice}</option>',
' {{/if}}',
' {{/each}}',
' </select>',
// else a simple text input
' {{else}}',
' <input placeholder="${param.default}" class="input-xlarge" type="text">',
' {{/if}}',
' <p class="help-block">${param.help}</p>',
' </div>',
' </div>',
' {{/each}}',
' <div class="control-group">',
' <label class="control-label"></label>',
' <div class="controls">',
' <div class="btn-toolbar">',
' <div class="btn-group">',
' <a class="btn" href="#"><i class="icon-refresh"></i>Reset</a>',
' <a class="btn btn-primary" href="#"><i class="icon-cog icon-white"></i> Run</a>',
' </div>',
' </div>',
' </div>',
' </div>',
'</fieldset>',
'</form>'].join('\n'),
errorTemplate: ['<div class="alert alert-error">',
'<button type="button" class="close" data-dismiss="alert">&times;</button>',
'<strong>${title}</strong> ${message}',
'</div>'].join('\n')
};
var opts = $.extend(defaults, options);
var _displayWorkflowsList = function(div) {
$.ajax({
url: opts.jflowServerWebPath + '/get_available_workflows?callback=?',
dataType: "json",
success: function(data) {
$.tmpl(opts["workflowsList"], {workflows: data}).appendTo(div);
}
});
}
var _displayWorkflowForm = function(div) {
if (opts.workflow_class == null) {
$.tmpl(opts["errorTemplate"], {"title": "Error!", "message": "workflow_class option is required."}).appendTo(div);
} else {
$.ajax({
url: opts.jflowServerWebPath + '/get_available_workflows?callback=?',
dataType: "json",
success: function(data) {
var workflow = null;
for (var i in data) {
if (data[i]["class"] == opts.workflow_class) {
workflow = data[i];
break;
}
}
$.tmpl(opts["workflowForm"], {workflow: workflow}).appendTo(div);
}
});
}
}
this.each(function() {
var $t = $(this),
indexes = new Array(),
index = 0;
// First off, detect jflow containers and found out which index should be used
$("[id^="+JFLOW_CONTAINER_PREFIX+"]").each(function() {
indexes.push($(this).attr("id").split("_")[2]);
});
while (true) {
if (indexes.indexOf(index.toString()) == -1) { break; }
else { index += 1; }
}
$t.html('<div id="'+JFLOW_CONTAINER_PREFIX+index.toString()+'"></div>');
var $div = $("#"+JFLOW_CONTAINER_PREFIX+index.toString());
switch (opts.template) {
case "workflowForm":
_displayWorkflowForm($div);
break;
default:
_displayWorkflowsList($div);
break
}
});
return this;
};
})(jQuery);
\ No newline at end of file
bin/jflow_server.py
View file @ 6f225cb0
......@@ -104,13 +104,15 @@ class JFlowServer (object):
"name": param.name})
workflows.append({"name": instance.name,
"help": instance.description,
"params": parameters})
"class": instance.__class__.__name__,
"parameters": parameters})
return workflows
@cherrypy.expose
@jsonify
def run_workflow(self, **kwargs):
pass
print kwargs
return [{"return": "sdsdsd"}]
# self.wfmanager.run_workflow(workflow_class, args, True)
@cherrypy.expose
......
bin/jquery.tmpl.min.js 0 → 100644
View file @ 6f225cb0
/*
* jQuery Templates Plugin 1.0.0pre
* http://github.com/jquery/jquery-tmpl
* Requires jQuery 1.4.2
*
* Copyright 2011, Software Freedom Conservancy, Inc.
* Dual licensed under the MIT or GPL Version 2 licenses.
* http://jquery.org/license
*/
(function(a){var r=a.fn.domManip,d="_tmplitem",q=/^[^<]*(<[\w\W]+>)[^>]*$|\{\{\! /,b={},f={},e,p={key:0,data:{}},i=0,c=0,l=[];function g(g,d,h,e){var c={data:e||(e===0||e===false)?e:d?d.data:{},_wrap:d?d._wrap:null,tmpl:null,parent:d||null,nodes:[],calls:u,nest:w,wrap:x,html:v,update:t};g&&a.extend(c,g,{nodes:[],parent:d});if(h){c.tmpl=h;c._ctnt=c._ctnt||c.tmpl(a,c);c.key=++i;(l.length?f:b)[i]=c}return c}a.each({appendTo:"append",prependTo:"prepend",insertBefore:"before",insertAfter:"after",replaceAll:"replaceWith"},function(f,d){a.fn[f]=function(n){var g=[],i=a(n),k,h,m,l,j=this.length===1&&this[0].parentNode;e=b||{};if(j&&j.nodeType===11&&j.childNodes.length===1&&i.length===1){i[d](this[0]);g=this}else{for(h=0,m=i.length;h<m;h++){c=h;k=(h>0?this.clone(true):this).get();a(i[h])[d](k);g=g.concat(k)}c=0;g=this.pushStack(g,f,i.selector)}l=e;e=null;a.tmpl.complete(l);return g}});a.fn.extend({tmpl:function(d,c,b){return a.tmpl(this[0],d,c,b)},tmplItem:function(){return a.tmplItem(this[0])},template:function(b){return a.template(b,this[0])},domManip:function(d,m,k){if(d[0]&&a.isArray(d[0])){var g=a.makeArray(arguments),h=d[0],j=h.length,i=0,f;while(i<j&&!(f=a.data(h[i++],"tmplItem")));if(f&&c)g[2]=function(b){a.tmpl.afterManip(this,b,k)};r.apply(this,g)}else r.apply(this,arguments);c=0;!e&&a.tmpl.complete(b);return this}});a.extend({tmpl:function(d,h,e,c){var i,k=!c;if(k){c=p;d=a.template[d]||a.template(null,d);f={}}else if(!d){d=c.tmpl;b[c.key]=c;c.nodes=[];c.wrapped&&n(c,c.wrapped);return a(j(c,null,c.tmpl(a,c)))}if(!d)return[];if(typeof h==="function")h=h.call(c||{});e&&e.wrapped&&n(e,e.wrapped);i=a.isArray(h)?a.map(h,function(a){return a?g(e,c,d,a):null}):[g(e,c,d,h)];return k?a(j(c,null,i)):i},tmplItem:function(b){var c;if(b instanceof a)b=b[0];while(b&&b.nodeType===1&&!(c=a.data(b,"tmplItem"))&&(b=b.parentNode));return c||p},template:function(c,b){if(b){if(typeof b==="string")b=o(b);else if(b instanceof a)b=b[0]||{};if(b.nodeType)b=a.data(b,"tmpl")||a.data(b,"tmpl",o(b.innerHTML));return typeof c==="string"?(a.template[c]=b):b}return c?typeof c!=="string"?a.template(null,c):a.template[c]||a.template(null,q.test(c)?c:a(c)):null},encode:function(a){return(""+a).split("<").join("&lt;").split(">").join("&gt;").split('"').join("&#34;").split("'").join("&#39;")}});a.extend(a.tmpl,{tag:{tmpl:{_default:{$2:"null"},open:"if($notnull_1){__=__.concat($item.nest($1,$2));}"},wrap:{_default:{$2:"null"},open:"$item.calls(__,$1,$2);__=[];",close:"call=$item.calls();__=call._.concat($item.wrap(call,__));"},each:{_default:{$2:"$index, $value"},open:"if($notnull_1){$.each($1a,function($2){with(this){",close:"}});}"},"if":{open:"if(($notnull_1) && $1a){",close:"}"},"else":{_default:{$1:"true"},open:"}else if(($notnull_1) && $1a){"},html:{open:"if($notnull_1){__.push($1a);}"},"=":{_default:{$1:"$data"},open:"if($notnull_1){__.push($.encode($1a));}"},"!":{open:""}},complete:function(){b={}},afterManip:function(f,b,d){var e=b.nodeType===11?a.makeArray(b.childNodes):b.nodeType===1?[b]:[];d.call(f,b);m(e);c++}});function j(e,g,f){var b,c=f?a.map(f,function(a){return typeof a==="string"?e.key?a.replace(/(<\w+)(?=[\s>])(?![^>]*_tmplitem)([^>]*)/g,"$1 "+d+'="'+e.key+'" $2'):a:j(a,e,a._ctnt)}):e;if(g)return c;c=c.join("");c.replace(/^\s*([^<\s][^<]*)?(<[\w\W]+>)([^>]*[^>\s])?\s*$/,function(f,c,e,d){b=a(e).get();m(b);if(c)b=k(c).concat(b);if(d)b=b.concat(k(d))});return b?b:k(c)}function k(c){var b=document.createElement("div");b.innerHTML=c;return a.makeArray(b.childNodes)}function o(b){return new Function("jQuery","$item","var $=jQuery,call,__=[],$data=$item.data;with($data){__.push('"+a.trim(b).replace(/([\\'])/g,"\\$1").replace(/[\r\t\n]/g," ").replace(/\$\{([^\}]*)\}/g,"{{= $1}}").replace(/\{\{(\/?)(\w+|.)(?:\(((?:[^\}]|\}(?!\}))*?)?\))?(?:\s+(.*?)?)?(\(((?:[^\}]|\}(?!\}))*?)\))?\s*\}\}/g,function(m,l,k,g,b,c,d){var j=a.tmpl.tag[k],i,e,f;if(!j)throw"Unknown template tag: "+k;i=j._default||[];if(c&&!/\w$/.test(b)){b+=c;c=""}if(b){b=h(b);d=d?","+h(d)+")":c?")":"";e=c?b.indexOf(".")>-1?b+h(c):"("+b+").call($item"+d:b;f=c?e:"(typeof("+b+")==='function'?("+b+").call($item):("+b+"))"}else f=e=i.$1||"null";g=h(g);return"');"+j[l?"close":"open"].split("$notnull_1").join(b?"typeof("+b+")!=='undefined' && ("+b+")!=null":"true").split("$1a").join(f).split("$1").join(e).split("$2").join(g||i.$2||"")+"__.push('"})+"');}return __;")}function n(c,b){c._wrap=j(c,true,a.isArray(b)?b:[q.test(b)?b:a(b).html()]).join("")}function h(a){return a?a.replace(/\\'/g,"'").replace(/\\\\/g,"\\"):null}function s(b){var a=document.createElement("div");a.appendChild(b.cloneNode(true));return a.innerHTML}function m(o){var 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a.map(a(a.isArray(b)?b.join(""):b).filter(d||"*"),function(a){return c?a.innerText||a.textContent:a.outerHTML||s(a)})}function t(){var b=this.nodes;a.tmpl(null,null,null,this).insertBefore(b[0]);a(b).remove()}})(jQuery);
\ No newline at end of file
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