Update Smarty template for N90 and logest reads #16

ui/nG6/pi1/analyzes/Run_stats.tpl

@@ -169,6 +169,8 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 						{foreach from=$rawdata_headers key=k item=head}
 							{assign var="headQ7" value=$head|cat:"_Q7"}
 							{assign var="headQ9" value=$head|cat:"_Q9"}
+							{assign var="count_longread" value=1}
+							{assign var="corresp_num" value=['1' => 'First', '2' => 'Second', '3' => 'Third', '4' => 'Fourth', '5' => 'Fifth']}
 							<tr>
 								{if ($head == 'mean_read_quality')}
 									<td><label>{$head|replace:'_':' '}</label></td>
@@ -185,6 +187,12 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 									<td>{($rawdata.$head)|number_format:0:',':' '}</td>
 									<td>{($Q7.$headQ7)|number_format:0:',':' '} ({($Q7.$headQ7 / $rawdata.total_bases*100)|number_format:2:',':' '}%)</td>
 									<td>{($Q9.$headQ9)|number_format:0:',':' '} ({($Q9.$headQ9 / $rawdata.total_bases*100)|number_format:2:',':' '}%)</td>
+								{elseif ($head|strstr:"longread")}
+									{assign var="corresp" value=$head|replace:'longread':''}
+									<td><label>{$corresp_num[$corresp]} longest read</label></td>
+									<td>{($rawdata.$head)|number_format:0:',':' '}</td>
+									<td>{($Q7.$headQ7)|number_format:0:',':' '}</td>
+									<td>{($Q9.$headQ9)|number_format:0:',':' '}</td>
 								{else}
 									<td><label>{$head|replace:'_':' '}</label></td>
 									<td>{($rawdata.$head)|number_format:0:',':' '}</td>
@@ -374,6 +382,9 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 				</li>
 				<li><strong>N50 read length</strong> : 
 					50% of all bases come from reads longer than this value.
+				</li>
+					<li><strong>N90 read length</strong> : 
+					90% of all bases come from reads longer than this value.
 				</li>
 				<li><strong>Mean read quality</strong> : 
 					The mean quality (qscore ONT) for this Flow Cell.

[Maxime Manno]

Wrong issue number... The good one is #113 (closed)