Commit 63bef845 authored by Jerome Mariette's avatar Jerome Mariette

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parent 49831438
......@@ -27,6 +27,7 @@ from ng6.run import Run
class R454 (Workflow):
def run(self):
# first check if file provided exists
if not os.path.isfile(self.args["data_file"]):
sys.exit(2, "error: %s file does not exists\n" % (file))
......@@ -53,11 +54,9 @@ class R454 (Workflow):
# then add the run to the project
my_project.add_run(my_run)
# extract the sff input file
#sff_extract = self.add_component("SFFextract", [files_to_process])
# archive the files
# add raw files to the run
addrawfiles = self.add_component("AddRawFiles", [my_run, self.args["data_file"], self.args["compression"]])
#archivefiles = self.add_component("ArchiveFiles", [my_run, files_to_process, self.args["compression"]])
# extract the files to process
sff_extract = self.add_component("SFFextract", [files_to_process])
\ No newline at end of file
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