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Commit 618b7824 authored by Claire Kuchly's avatar Claire Kuchly
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update administration run and analyze passed retention date

parent fd11764e
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bin/ng6_database.sql
View file @ 618b7824
......@@ -1082,34 +1082,6 @@ CREATE TABLE IF NOT EXISTS `tx_nG6_analyze_comment` (
KEY `parent` (`pid`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 AUTO_INCREMENT=1 ;
CREATE OR REPLACE VIEW `tx_nG6_view_project_run` AS
SELECT tx_nG6_project.uid AS project_id, tx_nG6_project.name AS project_name, tx_nG6_run.uid AS run_id, tx_nG6_run.storage_size AS storage_size, tx_nG6_run.purged_size AS purged_size, tx_nG6_run.data_state AS state, tx_nG6_run.retention_date AS retention_date
FROM tx_nG6_run
INNER JOIN tx_nG6_project_run ON tx_nG6_project_run.run_id = tx_nG6_run.uid
INNER JOIN tx_nG6_project ON tx_nG6_project.uid = tx_nG6_project_run.project_id
CREATE OR REPLACE VIEW tx_nG6_view_project_run_analyze AS
SELECT tx_nG6_project.uid AS project_id, tx_nG6_project.name AS project_name, tx_nG6_analyze.uid AS analyze_id, tx_nG6_analyze.storage_size AS storage_size, tx_nG6_analyze.purged_size AS purged_size, tx_nG6_analyze.data_state AS state, tx_nG6_analyze.retention_date AS retention_date
FROM tx_nG6_run
INNER JOIN tx_nG6_project_run ON tx_nG6_project_run.run_id = tx_nG6_run.uid
INNER JOIN tx_nG6_project ON tx_nG6_project.uid = tx_nG6_project_run.project_id
INNER JOIN tx_nG6_run_analyze ON tx_nG6_run_analyze.run_id = tx_nG6_run.uid
INNER JOIN tx_nG6_analyze ON tx_nG6_run_analyze.analyze_id = tx_nG6_analyze.uid
CREATE OR REPLACE VIEW tx_nG6_view_project_analyze AS
SELECT tx_nG6_project.uid AS project_id, tx_nG6_project.name AS project_name, tx_nG6_analyze.uid AS analyze_id, tx_nG6_analyze.storage_size AS storage_size, tx_nG6_analyze.purged_size AS purged_size, tx_nG6_analyze.data_state AS state, tx_nG6_analyze.retention_date AS retention_date
FROM tx_nG6_project
INNER JOIN tx_nG6_project_analyze ON tx_nG6_project_analyze.project_id = tx_nG6_project.uid
INNER JOIN tx_nG6_analyze ON tx_nG6_project_analyze.analyze_id = tx_nG6_analyze.uid
CREATE OR REPLACE VIEW tx_nG6_view_project_user AS
SELECT tx_nG6_project.uid AS project_id, fe_users.username AS user_name, fe_users.email AS email, fe_users.usergroup AS user_group, fe_rights_levels.right_level_label AS right_level_label
FROM tx_nG6_project
INNER JOIN fe_rights ON fe_rights.project_id = tx_nG6_project.uid
INNER JOIN fe_users ON fe_rights.fe_user_id = fe_users.uid
INNER JOIN fe_groups ON fe_users.usergroup = fe_groups.uid
INNER JOIN fe_rights_levels ON fe_rights_levels.right_level_id = fe_rights.right_id
CREATE TABLE IF NOT EXISTS `tx_rsaauth_keys` (
`uid` int(11) NOT NULL AUTO_INCREMENT,
`pid` int(11) NOT NULL DEFAULT '0',
......
src/ng6/t3MySQLdb.py
View file @ 618b7824
......@@ -302,11 +302,11 @@ class t3MySQLdb(object):
crdate = str(time.mktime(datetime.date.today().timetuple())).split(".")[0]
retention_date = time.mktime((datetime.date.today() + datetime.timedelta(days=365*int(self.cfg_reader.get_retention_time()))).timetuple())
sql = "INSERT INTO tx_nG6_run (pid, tstamp, crdate, cruser_id, name, date, directory, species, data_nature,\
type, nb_sequences, full_seq_size, description, hidden, sequencer, retention_date, data_state) VALUES ('%s', '%s', '%s', %s, '%s', '%s','%s',\
'%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s')" % ( self.cfg_reader.get_pid(), crdate, crdate, cruser_id, self.esc_q(name),
type, nb_sequences, full_seq_size, description, hidden, sequencer, retention_date, data_state, purged_date, purged_size, mail_sent_date) VALUES ('%s', '%s', '%s', %s, '%s', '%s','%s',\
'%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s')" % ( self.cfg_reader.get_pid(), crdate, crdate, cruser_id, self.esc_q(name),
time.mktime(date.timetuple()), directory, self.esc_q(species),
self.esc_q(data_nature), self.esc_q(type), nb_sequences,
full_seq_size, self.esc_q(description), hidden, self.esc_q(sequencer),retention_date, "stored")
full_seq_size, self.esc_q(description), hidden, self.esc_q(sequencer),retention_date, "stored","0","0","0")
qresult = self.execute(sql, commit = True)
run_id = qresult.lastrowid
......@@ -684,12 +684,12 @@ class t3MySQLdb(object):
sql = "INSERT INTO tx_nG6_analyze (pid, tstamp, crdate, cruser_id, class, name, \
description, date, directory, software, version, \
hidden, params, is_editable, parent_uid, retention_date, data_state) \
hidden, params, is_editable, parent_uid, retention_date, data_state, purged_date, purged_size, mail_sent_date) \
VALUES ('%s', '%s', '%s', %s, '%s','%s', '%s', \
'%s', '%s', '%s', '%s', '%s', '%s' ,'%s', '%s', '%s', '%s')" % ( self.cfg_reader.get_pid(), crdate, crdate, cruser_id, aclass,
'%s', '%s', '%s', '%s', '%s', '%s' ,'%s', '%s', '%s', '%s', '%s', '%s', '%s')" % ( self.cfg_reader.get_pid(), crdate, crdate, cruser_id, aclass,
self.esc_q(name), self.esc_q(description), crdate,
directory, self.esc_q(software), self.esc_q(version),
hidden, self.esc_q(params), analysis_is_editable, parent_uid, retention_date, "stored" )
hidden, self.esc_q(params), analysis_is_editable, parent_uid, retention_date, "stored","0","0","0")
qresult = self.execute(sql, commit= True)
analysis_id = qresult.lastrowid
......
ui/nG6/class.tx_nG6_eid.php
View file @ 618b7824
......@@ -805,6 +805,7 @@ class tx_nG6_eid {
$cumulate = true;
}
print json_encode(tx_nG6_db::select_projects_evolution($values, $by, $role, $cumulate));
} elseif($type == 'data_distribution'){
$values = split(",", trim(t3lib_div::_GP('values')));
$by = trim(t3lib_div::_GP('by'));
......@@ -818,6 +819,7 @@ class tx_nG6_eid {
$octet = false;
}
print json_encode(tx_nG6_db::select_storage_distribution($values, $by, $role, $get_analyzes, $octet));
} elseif($type == 'data_evolution'){
$values = split(",", trim(t3lib_div::_GP('values')));
$by = trim(t3lib_div::_GP('by'));
......@@ -835,6 +837,7 @@ class tx_nG6_eid {
$cumulate = true;
}
print json_encode(tx_nG6_db::select_storage_evolution($values, $by, $role, $get_analyzes, $octet, $cumulate));
} elseif ($type == 'purge_managment_mail') {
$all_analyses = trim(t3lib_div::_GP('all_analyses'));
$all_runs = trim(t3lib_div::_GP('all_runs'));
......
ui/nG6/pi6/administration_view.tpl
View file @ 618b7824
......@@ -416,7 +416,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<div class="btn-group">
<button id="mail_sent" type="button" class="btn btn-sm btn-default" ><i class="glyphicon glyphicon-envelope"></i> Mark as mail sent </button>
<button id="retention_change" type="button" class="btn btn-sm btn-default"><i class="glyphicon glyphicon-refresh"></i> Change retention date </button>
<button id="purge" type="button" class="btn btn-sm btn-default"><i class="glyphicon glyphicon-minus"></i> purge data</button>
<button id="purge_data_list" type="button" class="btn btn-sm btn-default"><i class="glyphicon glyphicon-save"></i> Get purge data list </button>
</div>
</th>
</tr>
......
ui/nG6/res/js/tx_nG6_pi6.js
View file @ 618b7824
......@@ -493,8 +493,8 @@ $(function () {
});
});
//change retention date
//change retention date
$("#retention_change").click(function(){
var all_runs="",
......@@ -542,10 +542,48 @@ $(function () {
});
});
//return list of run and analyze to purge
$("#purge_data_list").click(function(){
var all_runs="",
all_analyses="";
$(':checked[id^=chk_col').each(function(){
col_name=$(this).val();
$(':checked[id^=chk_project').each(function(){
project_id=$(this).val();
if (col_name.startsWith("r") ){
cur_run=$('input[id='+col_name+"_"+project_id+']').attr("values");
if (cur_run != ""){
all_runs+=cur_run+"," ;
}
}else{
cur_analyse = $('input[id='+col_name+"_"+project_id+']').attr("values");
if (cur_analyse != ""){
all_analyses+=cur_analyse+"," ;
}
}
});
});
date_send = $("#change_retention_date").val();
$.ajax({
url: "index.php?eID=tx_nG6&type=get_data_list&all_analyses="+all_analyses+"&all_runs="+all_runs,
dataType: 'json',
success: function(val, status, xhr) {
all_analyses;
console.log(val);
}
});
});
});
function set_active_tab(active_tab){
if (!endsWith(window.location.href, "active_tab=" + active_tab)) {
window.location.assign(window.location.href+"&active_tab="+active_tab);
......
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