Commit 5d7e4a76 authored by Penom Nom's avatar Penom Nom
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parent 0dbc3a98
......@@ -24,7 +24,7 @@ from weaver.function import ShellFunction
class MothurClusterSplit(Component):
"""
Assign sequences to OTUs in two step : splitting of your files into distinct groupings and the clustering of these groupings.
@summary : Assign sequences to OTUs in two step : splitting of your files into distinct groupings and the clustering of these groupings.
"""
def define_parameters(self, fasta_files, taxonomy_files, names_files=None, count_table_files=None, taxonomy_level=4, cutoff=None, method="average"):
......@@ -41,7 +41,9 @@ class MothurClusterSplit(Component):
information to form the correct OTU's.
@param taxonomy_level : The taxonomy level you want to use to split the distance file,
3 meaning use the third taxon in each list.
@paramm cutoff :
@paramm cutoff : These numbers indicate the cutoff levels for sequence clusters.
'unique' means that a cluster is defined by all sequences that are identical along every single base in the sequence.
'0.01' indicates less than 1% difference.
@param method : Three clustering methods (Nearest neighbor, Furthest neighbor, Average
neighbor).
"""
......
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