Commit 5b04b0c8 authored by Maria Bernard's avatar Maria Bernard
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#
# Copyright (C) 2012 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# globals
--enzyme
sbfI
# sample description
--sample
sample-id=1
sample-name=RAD1
metadata=barcode:AAGGG
metadata=pool_id:OMYMUNE
read1=workflows/radseq/data/omymune_r1.fq.gz
--sample
sample-id=2
sample-name=RAD2
metadata=barcode:ACCAT
metadata=pool_id:OMYMUNE
read1=workflows/radseq/data/omymune_r1.fq.gz
# pools description
--pool
id=OMYMUNE
read1=workflows/radseq/data/omymune_r1.fq.gz
read2=workflows/radseq/data/omymune_r2.fq.gz
#run
--project-id
1
--name
radseq
--description
The radseq demonstration workflow.
--date
02/01/2014
--data-nature
DNA
--sequencer
HiSeq 2000
--type
Region 1
--species
Escherichia coli
# ustacks option if not default
--ustacks-opt
minCov=3
\ No newline at end of file
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