Commit 4dc3449d authored by Jerome Mariette's avatar Jerome Mariette
Browse files

add documentation to unique_seqs and change it's cathegorie

parent 82a7b613
[interface]
classification = sequence / cleaning
classification = sequence / clustering
[parameters]
; The analyse name to display in ng6
......
......@@ -7,7 +7,6 @@ read length of the sequencing machine is longer than the molecule that is sequen
<p>
<ul>
<li>input file: This program accepts fastq files as input.</li>
<li>qual file list: If a fasta file is used as input a qual file can be provided (has to be named input_file.qual or input_file.fasta.qual).</li>
<li>ng6cfg file: The NG6 run config file the analyse belongs to.</li>
<li>project id: The NG6 project id the analyse belongs to.</li>
</ul>
......
<p>
unique_seqs returns only the unique sequences found in a fastq-formatted sequence file and a file that indicates those sequences
that are identical to the reference sequence. Often times a collection of sequences will have a significant number of identical
sequences. It sucks up considerable processing time to have to align and process all of these sequences individually.
</p>
<blockquote>
<br>
<h3>inputs</h3>
<p>
<ul>
<li></li>
<li>input file: This program accepts fastq files as input.</li>
<li>ng6cfg file: The NG6 run config file the analyse belongs to.</li>
<li>project id: The NG6 project id the analyse belongs to.</li>
</ul>
</blockquote>
<h3></h3>
<p>
</p>
<h3></h3>
<p>
</p>
<h3></h3>
<h3>outputs</h3>
<p>
Outputs a unique seq file in fastq format and a log file with the number of occurence for each cluster.
</p>
\ No newline at end of file
[interface]
classification = sequence / cleaning
classification = sequence / clustering
[parameters]
; The analyse name to display in ng6
......
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