Commit 498ca1bb authored by Claire Kuchly's avatar Claire Kuchly
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elimination des filtres afin que le nombre de reads du run correspond au...

elimination des filtres afin que le nombre de reads du run correspond au nombre de subreads dans l'analyse RS_subreads
parent 8bf71236
......@@ -92,7 +92,7 @@ class RS_Subreads (Analysis):
This module filters reads based on a minimum subread length, polymerase read quality and polymerase read length
"""
def define_parameters(self, sample_names, input_files, min_subreads_length = 50, polymerase_read_qual = 75.0, polymerase_read_length = 50):
def define_parameters(self, sample_names, input_files, min_subreads_length = 0, polymerase_read_qual = 0, polymerase_read_length = 0):
self.add_parameter_list("sample_names", "sample names, each sample name must correspond to an input file", default=sample_names, required=True)
self.add_input_file_list( "input_files", "Input pacbio bas.h5 files", default=input_files, file_format = h5file, required=True)
self.add_parameter("min_subreads_length", "Subreads shorter than this value (in base pairs) are filtered out and excluded from analysis", default=min_subreads_length, type='int')
......
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