Commit 3989c196 authored by Gerald Salin's avatar Gerald Salin
Browse files

add logging + update jflow

parent a1f1b665
......@@ -479,6 +479,7 @@ class CasavaNG6Workflow(NG6Workflow):
filepath = casava_directory + "/" + file
if file.endswith(".log"):
self.log_files.append(filepath)
logging.getLogger("ng6").debug("CasavaNG6Workflow._process_casava_18 self.log_files = " + ",".join(self.log_files))
logging.getLogger("ng6").debug("CasavaNG6Workflow._process_casava_18 all_samples_id = " + ",".join(all_samples_id))
logging.getLogger("ng6").debug("CasavaNG6Workflow._process_casava_18 exiting")
......
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