add help to blast_contamination_search

454/templates/454_cnrgv/blast_contamination_search.read.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,ecoliDH1,ecoliK12_DH10B,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_default/blast_contamination_search.raw_input.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_fastq/blast_contamination_search.raw_input.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_from_run/blast_contamination_search.raw_input.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/ng6run2ergatis/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_mids_default/blast_contamination_search.all_mids.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_mids_from_run/blast_contamination_search.all_mids.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/ng6run2ergatis/$;PIPELINEID$;_raw_input/run.cfg

454/templates/454_mise/blast_contamination_search.read.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
 $;INPUT_DIRECTORY$;=
 ;; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$;=fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = ecoli536,ecoliDH1,ecoliK12_DH10B,genbank_phage,Saccharomyces_cerevisiae
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg

454/wfcomponent/blast_contamination_search.config

@@ -25,7 +25,7 @@ $;INPUT_FILE$; =
 $;INPUT_DIRECTORY$; = 
 ; the following is only used when iterating over an INPUT_DIRECTORY
 $;INPUT_EXTENSION$; = fna
-; the list of path to the formated database separated by a coma
+; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
 $;DATABASES$; = 
 ; The run config file the analyse belongs to
 $;NG6CFG_FILE$; =