Commit 357e1453 authored by Jerome Mariette's avatar Jerome Mariette
Browse files

add help to blast_contamination_search

parent e6643fb7
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,ecoliDH1,ecoliK12_DH10B,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/ng6run2ergatis/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/ng6run2ergatis/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$;=
$;INPUT_DIRECTORY$;=
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$;=fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; = ecoli536,ecoliDH1,ecoliK12_DH10B,genbank_phage,Saccharomyces_cerevisiae
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/config_run/$;PIPELINEID$;_raw_input/run.cfg
......
......@@ -25,7 +25,7 @@ $;INPUT_FILE$; =
$;INPUT_DIRECTORY$; =
; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$; = fna
; the list of path to the formated database separated by a coma
; the list of path to the formated database separated by a coma (database shouldnt have a "." in there name)
$;DATABASES$; =
; The run config file the analyse belongs to
$;NG6CFG_FILE$; =
......
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