Commit 2ff3b6bb authored by Maxime Manno's avatar Maxime Manno 🍜
Browse files

Change nb thread default for porechop

parent df449bf8
......@@ -30,8 +30,8 @@ class OntQualityCheck (NG6Workflow):
def define_parameters(self, function="process"):
logging.getLogger("jflow").debug("Begin OntQualityCheck.define_parameters! ont_qc")
self.add_parameter("compression", "How should the data be compressed once archived", choices= [ "none", "gz", "bz2"], default = "gz")
self.add_parameter("nb_threads", "Number of threads to use for porechop.", default=4)
self.add_parameter("fileformat", "The file format for porechop", choices= [ "fastq", "fasta"], default = "fastq")
self.add_parameter("nb_threads", "Number of threads to use for porechop (default=16).", default=16)
self.add_parameter("fileformat", "The file format for porechop (default=fastq).", choices= [ "fastq", "fasta"], default = "fastq")
self.add_input_file( "summary_file", "Input summary basecalling file", default=None)
self.add_parameter("barcoded", "Barcoded run or not", choices= [ "yes", "no"], default = "no")
......
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