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Commit 2e6bc505 authored by gsalin's avatar gsalin
Browse files

migration to fluid templating

parent adc420f3
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ui/nG6/ext_emconf.php
View file @ 2e6bc505
......@@ -10,7 +10,7 @@
# "version" and "dependencies" must not be touched!
########################################################################
$EM_CONF[$_EXTKEY] = array(
$EM_CONF['nG6'] = array(
'title' => 'nG6',
'description' => 'Next Generation Sequencing Information System',
'category' => 'plugin',
......
ui/nG6/ext_localconf.php
View file @ 2e6bc505
......@@ -6,52 +6,52 @@ exec('chmod 777 '.\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('n
exec('chmod 777 '.\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'res/smarty/templates_c');
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi1 = < plugin.tx_nG6_pi1.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi1/class.tx_nG6_pi1.php','_pi1','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi1/class.tx_nG6_pi1.php','_pi1','list_type',1);
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi2 = < plugin.tx_nG6_pi2.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi2/class.tx_nG6_pi2.php','_pi2','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi2/class.tx_nG6_pi2.php','_pi2','list_type',1);
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi3 = < plugin.tx_nG6_pi3.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi3/class.tx_nG6_pi3.php','_pi3','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi3/class.tx_nG6_pi3.php','_pi3','list_type',1);
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi4 = < plugin.tx_nG6_pi4.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi4/class.tx_nG6_pi4.php','_pi4','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi4/class.tx_nG6_pi4.php','_pi4','list_type',1);
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi5 = < plugin.tx_nG6_pi5.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi5/class.tx_nG6_pi5.php','_pi5','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi5/class.tx_nG6_pi5.php','_pi5','list_type',1);
## Extending TypoScript from static template uid=43 to set up userdefined tag:
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript($_EXTKEY,'setup','
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addTypoScript('nG6','setup','
tt_content.CSS_editor.ch.tx_nG6_pi6 = < plugin.tx_nG6_pi6.CSS_editor
',43);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43($_EXTKEY,'pi6/class.tx_nG6_pi6.php','_pi6','list_type',1);
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPItoST43('nG6','pi6/class.tx_nG6_pi6.php','_pi6','list_type',1);
## Added to do some ajax
......
ui/nG6/ext_tables.php
View file @ 2e6bc505
<?php
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
if (!defined ('TYPO3_MODE')) die ('Access denied.');
$TCA["fe_rights_levels"] = Array(
......@@ -7,7 +8,7 @@ $TCA["fe_rights_levels"] = Array(
'label' => 'right_level_id',
"default_sortby" => "ORDER BY right_level_id",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php"
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6')."tca.php"
),
"feInterface" => Array (
"fe_admin_fieldList" => "right_level_id, right_level_label",
......@@ -20,7 +21,7 @@ $TCA["fe_rights"] = Array(
'label' => 'right_id, project_id, fe_user_id',
"default_sortby" => "ORDER BY right_id",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php"
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6')."tca.php"
),
"feInterface" => Array (
"fe_admin_fieldList" => "fe_user_id, right_id, project_id",
......@@ -46,8 +47,8 @@ $TCA["tx_nG6_run"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_run.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_run.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, name, date, directory, species, data_nature, type, nb_sequences, full_seq_size, description, sequencer",
......@@ -69,8 +70,8 @@ $TCA["tx_nG6_analyze"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_analyze.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_analyze.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, parent_uid, class, name, description, date, directory, software, version, params",
......@@ -92,8 +93,8 @@ $TCA["tx_nG6_sample"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_sample.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_sample.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, run_id, mid, description",
......@@ -115,8 +116,8 @@ $TCA["tx_nG6_result"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_result.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_result.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "analyze_id, file, rkey, rvalue, rgroup",
......@@ -138,8 +139,8 @@ $TCA["tx_nG6_project_run"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_project_run.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_project_run.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, project_id, run_id",
......@@ -161,8 +162,8 @@ $TCA["tx_nG6_project_analyze"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_project_analyze.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_project_analyze.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, project_id, analyze_id",
......@@ -184,8 +185,8 @@ $TCA["tx_nG6_run_analyze"] = Array (
"enablecolumns" => Array (
"disabled" => "hidden",
),
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY)."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::siteRelPath($_EXTKEY)."icon_tx_nG6_run_analyze.gif",
"dynamicConfigFile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."tca.php",
"iconfile" => \TYPO3\CMS\Core\Utility\PathUtility::stripPathSitePrefix(ExtensionManagementUtility::extPath('nG6'))."icon_tx_nG6_run_analyze.gif",
),
"feInterface" => Array (
"fe_admin_fieldList" => "hidden, run_id, analyze_id",
......@@ -195,32 +196,32 @@ $TCA["tx_nG6_run_analyze"] = Array (
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi1']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi1', $_EXTKEY.'_pi1'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi1_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi1/class.tx_nG6_pi1_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi1']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi1', 'nG6'.'_pi1'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi1_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi1/class.tx_nG6_pi1_wizicon.php';
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi2']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi2', $_EXTKEY.'_pi2'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi2_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi2/class.tx_nG6_pi2_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi2']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi2', 'nG6'.'_pi2'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi2_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi2/class.tx_nG6_pi2_wizicon.php';
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi3']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi3', $_EXTKEY.'_pi3'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi3_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi3/class.tx_nG6_pi3_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi3']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi3', 'nG6'.'_pi3'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi3_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi3/class.tx_nG6_pi3_wizicon.php';
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi4']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi4', $_EXTKEY.'_pi4'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi4_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi4/class.tx_nG6_pi4_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi4']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi4', 'nG6'.'_pi4'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi4_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi4/class.tx_nG6_pi4_wizicon.php';
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi5']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi5', $_EXTKEY.'_pi5'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi5_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi5/class.tx_nG6_pi5_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi5']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi5', 'nG6'.'_pi5'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi5_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi5/class.tx_nG6_pi5_wizicon.php';
//\TYPO3\CMS\Core\Utility\GeneralUtility::loadTCA('tt_content');
$TCA['tt_content']['types']['list']['subtypes_excludelist'][$_EXTKEY.'_pi6']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi6', $_EXTKEY.'_pi6'),'list_type', $_EXTKEY);
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi6_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath($_EXTKEY).'pi6/class.tx_nG6_pi6_wizicon.php';
$TCA['tt_content']['types']['list']['subtypes_excludelist']['nG6'.'_pi6']='layout,select_key';
\TYPO3\CMS\Core\Utility\ExtensionManagementUtility::addPlugin(Array('LLL:EXT:nG6/locallang_db.xml:tt_content.list_type_pi6', 'nG6'.'_pi6'),'list_type', 'nG6');
if (TYPO3_MODE=="BE") $TBE_MODULES_EXT["xMOD_db_new_content_el"]["addElClasses"]["tx_nG6_pi6_wizicon"] = \TYPO3\CMS\Core\Utility\ExtensionManagementUtility::extPath('nG6').'pi6/class.tx_nG6_pi6_wizicon.php';
?>
ui/nG6/ext_tables.sql
View file @ 2e6bc505
......@@ -6,7 +6,7 @@ CREATE TABLE fe_rights_levels (
right_level_id int(11) NOT NULL,
right_level_label varchar(20) NOT NULL,
PRIMARY KEY (right_level_id),
) CHARSET=utf8 ;
);
/*
......@@ -17,7 +17,7 @@ CREATE TABLE fe_rights (
project_id int(11) NOT NULL,
right_id int(11) NOT NULL,
PRIMARY KEY (fe_user_id, project_id, right_id)
) CHARSET=utf8 ;
) ;
/*
......@@ -37,7 +37,7 @@ CREATE TABLE tx_nG6_project (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
......@@ -65,7 +65,7 @@ CREATE TABLE tx_nG6_run (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
/*
......@@ -92,7 +92,7 @@ CREATE TABLE tx_nG6_analyze (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
......@@ -114,7 +114,7 @@ CREATE TABLE tx_nG6_sample (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
/*
......@@ -137,7 +137,7 @@ CREATE TABLE tx_nG6_result (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
/*
......@@ -157,7 +157,7 @@ CREATE TABLE tx_nG6_project_run (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
/*
......@@ -177,7 +177,7 @@ CREATE TABLE tx_nG6_project_analyze (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
) ;
/*
......@@ -197,4 +197,4 @@ CREATE TABLE tx_nG6_run_analyze (
PRIMARY KEY (uid),
KEY parent (pid)
) CHARSET=utf8 ;
\ No newline at end of file
) ;
\ No newline at end of file
ui/nG6/pi1/class.tx_nG6_pi1_wizicon.php
View file @ 2e6bc505
......@@ -28,7 +28,7 @@
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi1_wizicon {
/**
......
ui/nG6/pi2/class.tx_nG6_pi2_wizicon.php
View file @ 2e6bc505
......@@ -26,7 +26,7 @@
*
* @author PF bioinformatique de Toulouse <>
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi2_wizicon {
/**
......
ui/nG6/pi3/class.tx_nG6_pi3_wizicon.php
View file @ 2e6bc505
......@@ -26,7 +26,7 @@
*
* @author PF bioinformatique de Toulouse <>
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi3_wizicon {
/**
......
ui/nG6/pi4/class.tx_nG6_pi4_wizicon.php
View file @ 2e6bc505
......@@ -26,7 +26,7 @@
*
* @author PF bioinformatique de Toulouse <>
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi4_wizicon {
/**
......
ui/nG6/pi5/class.tx_nG6_pi5_wizicon.php
View file @ 2e6bc505
......@@ -27,7 +27,7 @@
* @author PF bioinformatique de Toulouse <>
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi5_wizicon {
/**
......
ui/nG6/pi6/class.tx_nG6_pi6_wizicon.php
View file @ 2e6bc505
......@@ -26,7 +26,7 @@
*
* @author PF bioinformatique de Toulouse <>
*/
use \TYPO3\CMS\Core\Utility\ExtensionManagementUtility;
class tx_nG6_pi6_wizicon {
/**
......
ui/nG6/template/index.html → ui/nG6/template/Resources/Private/Templates/NG6.html
View file @ 2e6bc505
<!DOCTYPE HTML PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xml:lang="fr" xmlns="http://www.w3.org/1999/xhtml" lang="fr">
<head>
<title>nG6 - next Generation Sequencing Information System</title>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8"/>
<!-- <link rel="stylesheet" type="text/css" href="styles.css"/> -->
<!--[if lte IE 6]><link type="text/css" rel="stylesheet" href="http://www.alsacreations.com/css/ie6.css" media="all" /><![endif]-->
<!--[if IE 7]><link type="text/css" rel="stylesheet" href="http://www.alsacreations.com/css/ie7.css" media="all" /><![endif]-->
<script type="text/javascript">
$(document).ready(function() {
$('[class^=tooltip]').poshytip({
className: 'tip-twitter',
showTimeout: 1,
alignTo: 'target',
alignX: 'center',
offsetY: 5,
allowTipHover: false
});
});
</script>
</head>
<body>
<!-- ###DOCUMENT### -->
<!-- bloc header, content header, header-inside, evitement, logo, menu, sous-menu, recherche -->
<div id="ng6-header">
......@@ -33,27 +11,26 @@
<div id="sous-menu">
<!-- ###SEARCHBOX### -->
<!-- ###SEARCHBOX### -->
<!-- ###MENU### -->
<f:format.htmlentitiesDecode>{SEARCHBOX}</f:format.htmlentitiesDecode>
<!-- ###MENU### -->
<f:format.htmlentitiesDecode>{MENU}</f:format.htmlentitiesDecode>
</div>
</div>
</div> <!-- fin de header -->
<!-- Header-sep, designe la bande graphique entre l'entête et le bloc central -->
<!-- Header-sep, designe la bande graphique entre l'entte et le bloc central -->
<div id="ng6-header-sep" class="ng6-sep">
<div class="ng6-sep-inside">
<!-- ###BROWSER### -->
<!-- ###BROWSER### -->
<f:format.htmlentitiesDecode>{BROWSER}</f:format.htmlentitiesDecode>
</div>
</div>
<div id="global">
<!-- Bloc Center, contient center, content, sidebar et center-sep -->
<div id="page">
<div id="content">
<!-- ###CONTENT### -->
<!-- ###CONTENT### -->
<f:format.htmlentitiesDecode>{CONTENT}</f:format.htmlentitiesDecode>
</div> <!-- content -->
</div> <!-- fin de page -->
</div> <!-- fin de global -->
......@@ -94,7 +71,7 @@
<div class="ng6-bottom">
<div class="ng6-bottom2">
Copyright &copy; 2013, INRA | Designed by <a class="ng6-footer-link" href="http://bioinfo.genotoul.fr/" target="_blank">GenoToul Bioinfo</a>,
Copyright &copy; 2013, INRAe | Designed by <a class="ng6-footer-link" href="http://bioinfo.genotoul.fr/" target="_blank">GenoToul Bioinfo</a>,
<a class="ng6-footer-link" href="http://genomique.genotoul.fr/" target="_blank">GenoToul Genomic</a>
and <a class="ng6-footer-link" href="http://www.sigenae.org/" target="_blank">Sigenae</a> teams | Optimized for
<a class="tooltip-firefox firefox" href="http://www.mozilla.org/firefox" target="_blank" title="Mozilla Firefox"> </a>
......@@ -102,5 +79,3 @@
</div>
</div>
<!-- ###DOCUMENT### -->
</body>
</html>
\ No newline at end of file
ui/nG6/template/css/style.css → ui/nG6/template/Resources/Public/Css/style.css
View file @ 2e6bc505
......@@ -102,7 +102,7 @@ a img { border: 0; }
*
********************************/
#ng6-header { background: url(../images/bando-logo2.png) 50% 35px no-repeat #222426; border-bottom: 1px solid black;}
#ng6-header { background: url(../Images/bando-logo2.png) 50% 35px no-repeat #222426; border-bottom: 1px solid black;}
#ng6-header h1 { margin: 15px 0 0 0; padding: 0; height: 66px; font-size: 15px; line-height: 1; }
#ng6-header-inside { position: relative; width: 1200px; margin: 0 auto; }
......@@ -111,7 +111,7 @@ a img { border: 0; }
#evitement li a { color : #F1F1F1; text-decoration: none; font-weight: bold; }
#evitement li a:hover, #evitement li a:focus { color : #567f87; }
#sous-menu { width: 1200px; height: 66px; margin: 0 auto; background: url(../images/menu-bg.png) left top no-repeat; margin-top:-7px; }
#sous-menu { width: 1200px; height: 66px; margin: 0 auto; background: url(../Images/menu-bg.png) left top no-repeat; margin-top:-7px; }
#sous-menu ul { padding: 21px 0 0 10px; list-style: none; margin-left: 0px;}
#sous-menu ul li { margin-right: 15px; display: inline; }
#sous-menu li a { text-decoration: none; color: #fff; font-size: 1.5em; font-weight: bold; font-variant: small-caps; }
......@@ -134,7 +134,7 @@ a img { border: 0; }
********************************/
#ng6-footer {
background: url("../images/footer-glow.png") no-repeat scroll center top #2A2D30;
background: url("../Images/footer-glow.png") no-repeat scroll center top #2A2D30;
color: #FFFFFF;
/* position: relative; */
border-top: solid 1px #141414;
......@@ -196,9 +196,9 @@ a img { border: 0; }
transition: padding-left .5s ease-in-out;
background-size: 25px 75px;
}
.gbp { background: url('../images/genotoul-bioinfo-logo-small.png') no-repeat scroll 0 3px transparent; }
.ggp { background: url('../images/genotoul-genomic-logo-small.png') no-repeat scroll 0 3px transparent; }
.sp { background: url('../images/logo_sigenae_cercle_thumb.png') no-repeat scroll 0 3px transparent; }
.gbp { background: url('../Images/genotoul-bioinfo-logo-small.png') no-repeat scroll 0 3px transparent; }
.ggp { background: url('../Images/genotoul-genomic-logo-small.png') no-repeat scroll 0 3px transparent; }
.sp { background: url('../Images/logo_sigenae_cercle_thumb.png') no-repeat scroll 0 3px transparent; }
#ng6-footer-cols li.ng6-col ul li.ng6-page_item:hover {
padding-left: 36px;
background-position: 0 -36px;
......@@ -218,7 +218,7 @@ a img { border: 0; }
color: #567f87;
}
.ng6-bottom {
background: url("../images/bottom-shadow.png") repeat-x scroll 0 0 #222426;
background: url("../Images/bottom-shadow.png") repeat-x scroll 0 0 #222426;
color: #868686;
font-size: 12px;
line-height: 60px;
......@@ -238,7 +238,7 @@ a img { border: 0; }
margin-left: 45px;
width: 36px;
height: 36px;
background: url("../images/chrome.png");
background: url("../Images/chrome.png");
}
.ng6-bottom2 .firefox {
position: absolute;
......@@ -246,7 +246,7 @@ a img { border: 0; }
margin-left: 5px;
width: 36px;
height: 36px;
background: url("../images/firefox.png");
background: url("../Images/firefox.png");
}
.ng6-bottom2 a {
color: #F1F1F1;
......
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