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genotoul-bioinfo
ng6
Commits
1cc0bfcd
Commit
1cc0bfcd
authored
Jan 07, 2020
by
Celine Noirot
Browse files
#155
convert bool to int to avaoid warning
parent
84e7b84b
Changes
1
Show whitespace changes
Inline
Side-by-side
src/ng6/t3MySQLdb.py
View file @
1cc0bfcd
...
...
@@ -202,7 +202,7 @@ class t3MySQLdb(object):
right_level_id
=
qresult
.
rows
[
0
][
0
]
sql
=
"INSERT INTO tx_nG6_project (pid, tstamp, crdate, cruser_id, description, name, hidden, space_id)
\
VALUES ('%s','%s','%s','%s','%s','%s','%s','%s')"
%
(
self
.
cfg_reader
.
get_pid
(),
crdate
,
crdate
,
admin_id
,
self
.
esc_q
(
pdescription
),
self
.
esc_q
(
name
),
hidden
,
space_id
)
self
.
esc_q
(
pdescription
),
self
.
esc_q
(
name
),
int
(
hidden
)
,
space_id
)
qresult
=
self
.
execute
(
sql
,
commit
=
True
)
project_id
=
qresult
.
lastrowid
self
.
execute
(
"INSERT INTO fe_rights (fe_user_id, project_id, right_id) VALUES ('%s','%s','%s')"
%
(
admin_id
,
project_id
,
right_level_id
),
...
...
@@ -320,7 +320,7 @@ class t3MySQLdb(object):
'%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s', '%s')"
%
(
self
.
cfg_reader
.
get_pid
(),
crdate
,
crdate
,
cruser_id
,
self
.
esc_q
(
name
),
calendar
.
timegm
(
date
.
timetuple
()),
directory
,
self
.
esc_q
(
species
),
self
.
esc_q
(
data_nature
),
self
.
esc_q
(
type
),
nb_sequences
,
full_seq_size
,
self
.
esc_q
(
description
),
hidden
,
self
.
esc_q
(
sequencer
),
retention_date
,
"stored"
,
"0"
,
"0"
,
"0"
)
full_seq_size
,
self
.
esc_q
(
description
),
int
(
hidden
)
,
self
.
esc_q
(
sequencer
),
retention_date
,
"stored"
,
"0"
,
"0"
,
"0"
)
qresult
=
self
.
execute
(
sql
,
commit
=
True
)
run_id
=
qresult
.
lastrowid
...
...
@@ -471,7 +471,7 @@ class t3MySQLdb(object):
if
description
:
set_values
.
append
(
"description='%s'"
%
self
.
esc_q
(
description
))
if
hidden
:
set_values
.
append
(
"hidden=%s"
%
hidden
)
set_values
.
append
(
"hidden=%s"
%
int
(
hidden
)
)
if
sequencer
:
set_values
.
append
(
"sequencer='%s'"
%
self
.
esc_q
(
sequencer
))
if
storage_size
:
...
...
@@ -673,7 +673,8 @@ class t3MySQLdb(object):
#--------------------------------------------------------------------
# Analyze functions
def
add_analysis
(
self
,
aclass
,
name
,
description
,
cruser_login
,
date
,
directory
,
software
,
version
,
params
,
is_editable
,
retention_date
,
hidden
=
1
,
parent_uid
=
0
):
def
add_analysis
(
self
,
aclass
,
name
,
description
,
cruser_login
,
date
,
\
directory
,
software
,
version
,
params
,
is_editable
,
retention_date
,
hidden
=
1
,
parent_uid
=
0
):
"""
Update an Analyze
@param aclass : the class of the analysis
...
...
@@ -703,7 +704,7 @@ class t3MySQLdb(object):
'%s', '%s', '%s', '%s', '%s', '%s' ,'%s', '%s', '%s', '%s', '%s', '%s', '%s')"
%
(
self
.
cfg_reader
.
get_pid
(),
crdate
,
crdate
,
cruser_id
,
aclass
,
self
.
esc_q
(
name
),
self
.
esc_q
(
description
),
crdate
,
directory
,
self
.
esc_q
(
software
),
self
.
esc_q
(
version
),
hidden
,
self
.
esc_q
(
params
),
analysis_is_editable
,
parent_uid
,
retention_date
,
"stored"
,
"0"
,
"0"
,
"0"
)
int
(
hidden
)
,
self
.
esc_q
(
params
),
analysis_is_editable
,
parent_uid
,
retention_date
,
"stored"
,
"0"
,
"0"
,
"0"
)
qresult
=
self
.
execute
(
sql
,
commit
=
True
)
analysis_id
=
qresult
.
lastrowid
...
...
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