#53 add test data to the ont_qc workflow

17247d0b · Gerald Salin · 256b2ced · 17247d0b · 17247d0b · 17247d0b
Commit 17247d0b authored Aug 13, 2018 by Gerald Salin
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/0/tete.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/0/tete.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/0/toto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/0/toto.fast5
+toto
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/1/titi.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/1/titi.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/1/tutu.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/1/tutu.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/2/tyto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/2/tyto.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run3/fast5/2/tyty.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run3/fast5/2/tyty.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/0/tete.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/0/tete.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/0/toto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/0/toto.fast5
+toto
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/1/titi.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/1/titi.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/1/tutu.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/1/tutu.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/2/tyto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/2/tyto.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_1/fast5/2/tyty.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_1/fast5/2/tyty.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/0/tete.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/0/tete.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/0/toto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/0/toto.fast5
+toto
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/1/titi.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/1/titi.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/1/tutu.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/1/tutu.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/2/tyto.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/2/tyto.fast5
+titi
--- a/workflows/ont_qc/data/fast5_dir/run_2/fast5/2/tyty.fast5
+++ b/workflows/ont_qc/data/fast5_dir/run_2/fast5/2/tyty.fast5
+titi
--- a/workflows/ont_qc/data/ont_qc_barcoded.conf
+++ b/workflows/ont_qc/data/ont_qc_barcoded.conf
@@ -33,7 +33,7 @@ arabido
 test-dev

 --summary-file
-/work/ng6-test/claire/test_ont_qc/sequencing_summary_barcoded_test.txt
+workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
 --barcoded
 yes
 --nb-threads
@@ -41,10 +41,8 @@ yes
 --fileformat
 fastq
 --fast5dir
-/work/ng6-test/claire/test_ont_qc/fast5_dir
+workflows/ont_qc/data/fast5_dir

 --sample
 sample-name=ONT_sample
-#read1=/MinION/20170308_arab1D_LSK108_MN19767/20170308_arab1D_LSK108_MN19767_albacorev1.2.4/20170308_arab1D_LSK108_MN19767_albacorev1.2.4.fastq
-read1=/work/ng6-test/claire/test_ont_qc/test*.fastq
-#read2=/work/ng6-test/claire/test_ont_qc/test2.fastq
\ No newline at end of file
+read1=workflows/ont_qc/data/test*.fastq
--- a/workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
+++ b/workflows/ont_qc/data/sequencing_summary_barcoded_test.txt