Merge branch 'issue#190' into 'dev'

Merge branch Issue#190 with master

See merge request !109

src/ng6/analysis.py

@@ -752,12 +752,14 @@ class Analysis (Component):
             
         return [retcode, str_cmd]
     
-    def get_web_filepath(self, file_name, base_filepath='fileadmin' ):
-        curr_dir=self.directory
-        #If analysis already exists, retrieve directory from db (need for migration step, to get the real destination directory)
-        if self.id != None : 
-            t3mysql = t3MySQLdb()
-            curr_dir= t3mysql.select_analysis_directory(str(self.id))
-        return base_filepath + os.path.join(curr_dir, file_name)
+def get_web_filepath(self, file_name, base_filepath='fileadmin' ):
+        """
+          returns the full web filepath from a given filename 
+          @param file_name     : the path to the file to link
+          @param base_filepath : the first directory in the path (depends on the server's directory structure)
+          @return              : the full web filepath
+        """
+        return base_filepath + os.path.join(self.get_directory(), file_name)
+
         
         

ui/nG6/lib/class.tx_nG6_utils.php

@@ -160,7 +160,8 @@ class tx_nG6_utils {
     			return 0;
     		}
     		
-    		$stream = ssh2_exec($connection, 'find '.$directory.' -maxdepth 1 -not -name "*.html" -not -name "*.png" -type f -exec rm -f {} \;');
+    		#Exclusion of the log files from the purge process
+    		$stream = ssh2_exec($connection, 'find '.$directory.' -maxdepth 1 -not -name "*.html" -not -name "*.png" -not -name "*.log" -not -name "*.log.gz" -not -name "*.pdf" -not -name "md5sum.txt" -not -name "*GXB02039*" -not -name "*PCT0078*" -type f -exec rm -f {} \;');
     		$errorStream = ssh2_fetch_stream($stream, SSH2_STREAM_STDERR);
     		// Enable blocking for both streams
     		stream_set_blocking($errorStream, true);