Add 10X index reading from application.properties file

src/ng6/config_reader.py

@@ -167,6 +167,23 @@ class NG6ConfigReader(object):
         except :
             raise Exception("Failed when parsing the config file get_454_mids !")
 
+    def get_10X_indexs(self):
+        """
+        return the 10X indexs list
+            @return : hash table with 10X barcode list of index 
+        """
+        try:
+            barcode_array = {}
+            barcodes = self.reader.items("10X_barcodes")
+            for barcode in barcodes:
+                #print("config reader")
+                #print(barcode[0])
+                #logging.getLogger("ng6").debug("barcode[0] = " + barcode[0].upper())
+                barcode_array[barcode[0].upper()] = barcode[1].upper()
+            return barcode_array
+        except : 
+            raise Exception("Failed when parsin the config file for 10X barcodes !")
+
     def get_workflow_filters(self):
         """
             Return a list of workflow class names