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genotoul-bioinfo
ng6
Commits
07725731
Commit
07725731
authored
Sep 18, 2019
by
Maxime Manno
🍜
Browse files
Add pdf file into the log file ONT analysis
#131
parent
765675dd
Changes
1
Hide whitespace changes
Inline
Side-by-side
workflows/ont_qc/__init__.py
View file @
07725731
...
@@ -64,6 +64,8 @@ class OntQualityCheck (NG6Workflow):
...
@@ -64,6 +64,8 @@ class OntQualityCheck (NG6Workflow):
# find .log files
# find .log files
for
file
in
glob
(
exec_path
+
"/*.log"
):
for
file
in
glob
(
exec_path
+
"/*.log"
):
self
.
log_files
.
append
(
file
)
self
.
log_files
.
append
(
file
)
for
file
in
glob
(
exec_path
+
"/*.pdf"
):
self
.
log_files
.
append
(
file
)
logging
.
getLogger
(
"jflow"
).
debug
(
"OntQualityCheck._process.logfile self.log_files = "
+
","
.
join
(
self
.
log_files
))
logging
.
getLogger
(
"jflow"
).
debug
(
"OntQualityCheck._process.logfile self.log_files = "
+
","
.
join
(
self
.
log_files
))
logging
.
getLogger
(
"jflow"
).
debug
(
"OntQualityCheck._process.logfile exiting"
)
logging
.
getLogger
(
"jflow"
).
debug
(
"OntQualityCheck._process.logfile exiting"
)
...
...
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