Merge branch 'nG6_ont-qc_update' into 'master'

Ng6 ont qc update

See merge request !24

workflows/ont_qc/__init__.py

@@ -49,7 +49,7 @@ class OntQualityCheck (NG6Workflow):
         
         addrawfiles = self.add_component("AddRawFiles", [self.runobj, self.get_all_reads(), self.compression])
         #nanoplot = self.add_component("Nanoplot", [sample.name,self.get_all_reads(), self.nb_threads, True, "png", self.nanoplot_color,"nanoplot.tar.gz"])
-        ontstat = self.add_component("Run_stats", [self.summary_file, self.barcoded])
+        ontstat = self.add_component("Run_stats", [self.summary_file, self.barcoded, sample_names[0]])
         if self.trimming == "yes":
             trim_porechop = self.add_component("Trim_porechop", [self.get_all_reads() , "discard_middle"])
         if self.fast5dir != None:

workflows/ont_qc/data/ont_qc_barcoded.conf

@@ -16,7 +16,7 @@
 #
 
 --date
-25/06/2018
+08/04/2019
 --data-nature
 DNA
 --sequencer
@@ -33,16 +33,10 @@ arabido
 test-dev
 
 --summary-file
-workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
+/save/ng6-test/src/ng6-git-mmanno/workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
 --barcoded
 yes
---nb-threads
-4
---fileformat
-fastq
---fast5dir
-workflows/ont_qc/data/fast5_dir
 
 --sample
 sample-name=ONT_sample
-read1=workflows/ont_qc/data/test*.fastq
+read1=/save/ng6-test/src/ng6-git-mmanno/workflows/ont_qc/data/test*.fastq