Commit 002b5c46 authored by Maxime Manno's avatar Maxime Manno 🍜
Browse files

Merge branch 'nG6_ont-qc_update' into 'master'

Ng6 ont qc update

See merge request !24
parents c24bcf7e d215dd4f
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......@@ -49,7 +49,7 @@ class OntQualityCheck (NG6Workflow):
addrawfiles = self.add_component("AddRawFiles", [self.runobj, self.get_all_reads(), self.compression])
#nanoplot = self.add_component("Nanoplot", [sample.name,self.get_all_reads(), self.nb_threads, True, "png", self.nanoplot_color,"nanoplot.tar.gz"])
ontstat = self.add_component("Run_stats", [self.summary_file, self.barcoded])
ontstat = self.add_component("Run_stats", [self.summary_file, self.barcoded, sample_names[0]])
if self.trimming == "yes":
trim_porechop = self.add_component("Trim_porechop", [self.get_all_reads() , "discard_middle"])
if self.fast5dir != None:
......
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......@@ -16,7 +16,7 @@
#
--date
25/06/2018
08/04/2019
--data-nature
DNA
--sequencer
......@@ -33,16 +33,10 @@ arabido
test-dev
--summary-file
workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
/save/ng6-test/src/ng6-git-mmanno/workflows/ont_qc/data/sequencing_summary_barcoded_test.txt
--barcoded
yes
--nb-threads
4
--fileformat
fastq
--fast5dir
workflows/ont_qc/data/fast5_dir
--sample
sample-name=ONT_sample
read1=workflows/ont_qc/data/test*.fastq
read1=/save/ng6-test/src/ng6-git-mmanno/workflows/ont_qc/data/test*.fastq
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