index.html 5.73 KB
Newer Older
Jerome Mariette's avatar
Jerome Mariette committed
1
2
<!DOCTYPE html>
<html lang="en">
Penom Nom's avatar
Penom Nom committed
3
4
5
  <head>
    <meta charset="utf-8">
    <meta name="viewport" content="width=device-width, initial-scale=1">
Jerome Mariette's avatar
Jerome Mariette committed
6

Penom Nom's avatar
Penom Nom committed
7
    <title>NG6</title>
Jerome Mariette's avatar
Jerome Mariette committed
8

Penom Nom's avatar
Penom Nom committed
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
    <!-- Bootstrap core CSS -->
    <link href="css/bootstrap.min.css" rel="stylesheet">
    <!-- Bootstrap theme -->
    <link href="css/bootstrap-theme.min.css" rel="stylesheet">

    <!-- Custom styles for this template -->
    <link href="css/theme.css" rel="stylesheet">

    <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries -->
    <!--[if lt IE 9]>
      <script src="https://oss.maxcdn.com/html5shiv/3.7.2/html5shiv.min.js"></script>
      <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
    <![endif]-->
  </head>

  <body role="document">
Jerome Mariette's avatar
Jerome Mariette committed
25

Penom Nom's avatar
Penom Nom committed
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
    <!-- Fixed navbar -->
    <div class="navbar navbar-inverse navbar-fixed-top" role="navigation">
      <div class="container">
        <div class="navbar-header">
          <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target=".navbar-collapse">
            <span class="sr-only">Toggle navigation</span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
          </button>
          <a class="navbar-brand" href="./index.html">NG6</a>
        </div>
        <div class="navbar-collapse collapse">
          <ul class="nav navbar-nav">
            <li class="active"><a href="./index.html">About</a></li>
            <li><a href="./install.html">Install</a></li>
            <li><a href="./quickstart.html">Quick start</a></li>
            <li class="dropdown">
              <a href="#" class="dropdown-toggle" data-toggle="dropdown">Documentation<span class="caret"></span></a>
              <ul class="dropdown-menu" role="menu">
                <li><a href="./core-workflow.html">Add a workflow</a></li>
                <li><a href="./core-analysis.html">Add an analysis</a></li>
                <li><a href="./type.html">Add a data type</a></li>
                <li><a href="./format.html">Add a file format</a></li>
                <li><a href="./advanced-configuration.html">Advanced configuration</a></li>
              </ul>
            </li>
53
54
			<li><a target="_blank" href="https://forgemia.inra.fr/genotoul-bioinfo/ng6/">Sources</a></li>
			<li><a href="mailto:support.bioinfo.genotoul@inra.fr">Contact</a></li>
Penom Nom's avatar
Penom Nom committed
55
56
57
58
          </ul>
        </div><!--/.nav-collapse -->
      </div>
    </div>
Jerome Mariette's avatar
Jerome Mariette committed
59

Penom Nom's avatar
Penom Nom committed
60
    <div class="container theme-showcase" role="main">
Jerome Mariette's avatar
Jerome Mariette committed
61

Penom Nom's avatar
Penom Nom committed
62
63
64
      <!-- Jumbotron -->
      <div class="jumbotron">
        <h1>NG6</h1>
Penom Nom's avatar
Penom Nom committed
65
        <p class="lead">An integrated next generation sequencing storage and processing environment.</p>
Penom Nom's avatar
Penom Nom committed
66
      </div>
Jerome Mariette's avatar
Jerome Mariette committed
67

Penom Nom's avatar
Penom Nom committed
68
69
      <div class="row">
        <div class="col-lg-6">
Penom Nom's avatar
Penom Nom committed
70
71
72
73
74
75
76
77
78
79
80
81
82
83
			<p>
				Next generation sequencing platforms are now well implanted in sequencing centers and some laboratories. Upcoming smaller scale machines 
				such as the 454 junior from Roche or the MiSeq from Illumina will increase the number of laboratories hosting a sequencer. In such a context, 
				it is important to provide these teams with an easily manageable environment to store and process the produced data.
			</p>
			<p>
				We describe a user-friendly information system able to manage large sets of sequencing data. It includes, on one hand, a 
				workflow environment already containing pipelines adapted to different input formats (sff, fasta, fastq and qseq), different sequencers 
				(Roche 454, Illumina HiSeq) and various analyses (quality control, assembly, alignment, diversity studies,…) and, on the other hand, 
				a secured web site giving access to the results. The connected user will be able to download raw and processed data and browse through 
				the analysis result statistics. The provided workflows can easily be modified or extended and new ones can be added. 
				
				Jflow is used as a workflow building, running and monitoring system. The analyzes can be run locally or in any cluster environment system.
			</p>
Penom Nom's avatar
Penom Nom committed
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
        </div><!--/span-->

        <div class="col-lg-6">
			<div style="text-align: center;">
				<img width="90%" src="img/ng6-global-architecture.png" class="img-rounded">
			</div> 
        </div><!--/span-->
      </div><!--/row-->

      <!-- row of columns -->
      <div class="row">
        <div class="col-lg-6">
          <h3>Add new workflows</h3>
          <p>Learn how to add new workflows.</p>
        </div>
        <div class="col-lg-6">
          <h3>Add new components</h3>
          <p>Your workflow requires new component, learn how to add new ones.</p>
        </div>
      </div>  
	  <div class="row">
        <div class="col-lg-6">
          <p><a class="btn btn-primary" href="./core-workflow.html" role="button">View details &raquo;</a></p>
        </div>
        <div class="col-lg-6">
Audrey Gibert's avatar
Audrey Gibert committed
109
          <p><a class="btn btn-primary" href="./core-analysis.html" role="button">View details &raquo;</a></p>
Penom Nom's avatar
Penom Nom committed
110
111
112
113
114
115
116
117
118
119
120
        </div>
      </div>  

      <hr>
      <footer>
      	<div class="container" style="text-align: center;">
		  <p>Copyright © 2015, INRA | Designed by <a target="_blank" href="http://bioinfo.genotoul.fr/">GenoToul Bioinfo platform</a> and <a target="_blank" href="http://www.sigenae.org/">Sigenae platform</a>.</p>
		</div>
      </footer>
      
    </div> <!-- /container -->
Jerome Mariette's avatar
Jerome Mariette committed
121

Penom Nom's avatar
Penom Nom committed
122
123
124
125
126
127
128
129
130
131
    <!-- Bootstrap core JavaScript
    ================================================== -->
    <!-- Placed at the end of the document so the pages load faster -->
    <script src="js/jquery.min.js"></script>
    <script src="js/bootstrap.min.js"></script>
    <!-- <script src="../../assets/js/docs.min.js"></script> -->
    <!-- IE10 viewport hack for Surface/desktop Windows 8 bug -->
    <!-- <script src="../../assets/js/ie10-viewport-bug-workaround.js"></script> -->    
  </body>
</html>