class.tx_nG6_pi1.php 19.9 KB
Newer Older
Jerome Mariette's avatar
Jerome Mariette committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
<?php
/***************************************************************
*  Copyright notice
*
*  (c) 2009 PF bioinformatique de Toulouse <>
*  All rights reserved
*
*  This script is part of the TYPO3 project. The TYPO3 project is
*  free software; you can redistribute it and/or modify
*  it under the terms of the GNU General Public License as published by
*  the Free Software Foundation; either version 2 of the License, or
*  (at your option) any later version.
*
*  The GNU General Public License can be found at
*  http://www.gnu.org/copyleft/gpl.html.
*
*  This script is distributed in the hope that it will be useful,
*  but WITHOUT ANY WARRANTY; without even the implied warranty of
*  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*  GNU General Public License for more details.
*
*  This copyright notice MUST APPEAR in all copies of the script!
***************************************************************/
/**
 * Plugin 'nG6' for the 'nG6' extension.
 *
 * @author	PF bioinformatique de Toulouse <>
 */

require_once(PATH_tslib.'class.tslib_pibase.php');
31
32
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_db.php');
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_utils.php');
33
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_upgrade.php');
34
require_once(t3lib_extMgm::extPath('nG6').'/res/smarty/libs/Smarty.class.php'); 
Jerome Mariette's avatar
Jerome Mariette committed
35
36

class tx_nG6_pi1 extends tslib_pibase {
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
37
	
Jerome Mariette's avatar
Jerome Mariette committed
38
39
40
41
42
43
44
45
46
47
48
49
	var $prefixId = 'tx_nG6_pi1';		// Same as class name
	var $scriptRelPath = 'pi1/class.tx_nG6_pi1.php';	// Path to this script relative to the extension dir.
	var $extKey = 'nG6';	// The extension key.
	
	/**
	 * Main method of your PlugIn
	 *
	 * @param	string		$content: The content of the PlugIn
	 * @param	array		$conf: The PlugIn Configuration
	 * @return	The content that should be displayed on the website
	 */
	function main($content,$conf)	{
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
50
		
Jerome Mariette's avatar
Jerome Mariette committed
51
52
53
		if (strstr($this->cObj->currentRecord,'tt_content'))	{
			$conf['pidList'] = $this->cObj->data['pages'];
		}
Jerome Mariette's avatar
Jerome Mariette committed
54
55
		// Setting the TypoScript passed to this function in $this->conf
		$this->conf=$conf;
56
		
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
57
		$this->pi_setPiVarDefaults();
Jerome Mariette's avatar
Jerome Mariette committed
58
59
60
		// Configuring so caching is not expected. This value means that no cHash params are ever set. We do this, because it's a USER_INT object!
		$this->pi_USER_INT_obj=1;
		// Loading the LOCAL_LANG values
61
62
		$this->pi_loadLL();		
		
63
		// Add the ng6 plugins css
Jerome Mariette's avatar
Jerome Mariette committed
64
65
66
		$GLOBALS['TSFE']->additionalHeaderData[$this->prefixId] = '
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.core.min.js"></script>
67
68
69
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.cookie.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.hotkeys.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.jstree.min.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
70
71
72
73
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.dialog.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.draggable.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.resizable.min.js"></script> 
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.bgiframe.min.js"></script>
74
75
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.dataTables.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.dataTables.plugins.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
76
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.url.packed.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
77
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.venny.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
78
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_pi1.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
79
80
81
82
83
84
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.highcharts.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.highcharts.exporting.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_classes.js"></script>		
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jsphylosvg-min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/raphael-min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/unitip.js"></script>
Penom Nom's avatar
Penom Nom committed
85
86
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.datePicker.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.jeditable.min.js"></script>
87
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_table.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
88
			<script type="text/javascript" src="typo3/md5.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
89
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/unitip.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
90
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.venny.css"/>
91
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.dataTables.css"/>
Penom Nom's avatar
Penom Nom committed
92
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.datePicker.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
93
94
95
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/tx_nG6.css"/>
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.core.css"/>
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.theme.css"/>
96
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.dialog.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
97
98
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.resizable.css"/>';			
		
99
100
		tx_nG6_db::check_db_rights_level();

Jerome Mariette's avatar
Jerome Mariette committed
101
		// if asked to upgrade to version 1.2
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
		if($this->piVars['upgrade']){
			$content = tx_nG6_upgrade::upgrade($this->piVars['upgrade']);
		} else {
		
			// If the user is authorized to access the specified project/run, display the page
			if (tx_nG6_db::user_is_authorized($GLOBALS['TSFE']->fe_user->user['uid'], $this->piVars['project_id'], $this->piVars['run_id'])) {
				switch((string)$this->conf['view'])	{
					// If the plugin is configured to display results by project
					case 'project':
						if ($this->piVars['analyze_id']) {
							$content .= $this->pi_analyze_view();
						} elseif ($this->piVars['project_id'] && $this->piVars['run_id']) {
							$content .= $this->pi_run_view();
						} else {
							$content .= $this->pi_project_view();
						}
						break;
					// If the plugin is configured to display results by run
					case 'run':
						if ($this->piVars['analyze_id']) {
							$content .= $this->pi_analyze_view();
						} else {
							$content .= $this->pi_run_view();
						}
						break;
					// If the plugin is not configured, display by project is default
					default:
Jerome Mariette's avatar
Jerome Mariette committed
129
						$content .= $this->pi_project_view();
130
131
132
133
134
						break;
				}
			// If the user is not authorized
			} else {
				$content .= $this->pi_getLL('not_authorized','[not_authorized]');
Jerome Mariette's avatar
Jerome Mariette committed
135
136
			}
		}
137
		
Jerome Mariette's avatar
Jerome Mariette committed
138
		return $this->pi_wrapInBaseClass($content);
Jerome Mariette's avatar
Jerome Mariette committed
139
	}
Jerome Mariette's avatar
Jerome Mariette committed
140

Jerome Mariette's avatar
Jerome Mariette committed
141
	/**
Jerome Mariette's avatar
Jerome Mariette committed
142
	 * Return the project view
Jerome Mariette's avatar
Jerome Mariette committed
143
	 */
Jerome Mariette's avatar
Jerome Mariette committed
144
	function pi_project_view()	{		
Jerome Mariette's avatar
Jerome Mariette committed
145
146
147
148
		$projects = array();
		// If a single element
		if ($this->piVars['project_id']) {
			$projects = array('project_'.$this->piVars['project_id'] => tx_nG6_db::select_project($this->piVars['project_id']));
Jerome Mariette's avatar
Jerome Mariette committed
149
		} else {
150
			$projects = tx_nG6_db::select_all_user_projects($GLOBALS['TSFE']->fe_user->user['uid'], 'tx_nG6_project.name');
Jerome Mariette's avatar
Jerome Mariette committed
151
		}
Jerome Mariette's avatar
Jerome Mariette committed
152
153
154
155
156
157
		$smarty = new Smarty();
		$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1');
		$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
		$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
		$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
		$smarty->security = true;
158
		$smarty->security_settings['MODIFIER_FUNCS'] = array('count');		
Jerome Mariette's avatar
Jerome Mariette committed
159
		// Add some information to the table
160
		$project_ids = "";
161
		foreach($projects as $project_id => $project_values) {
Jerome Mariette's avatar
Jerome Mariette committed
162
163
164
165
166
167
			
			// project admin ?
			if (tx_nG6_db::is_project_administrator($GLOBALS['TSFE']->fe_user->user['uid'], $project_values['id']) ) {
				$projects[$project_id]['is_project_admin'] = true;
			}else{
				$projects[$project_id]['is_project_admin'] = false;
168
			}
Jerome Mariette's avatar
Jerome Mariette committed
169
			
170
			$project_ids .= $project_values['id'].",";
Jerome Mariette's avatar
Jerome Mariette committed
171
			$projects[$project_id]['href'] = $this->pi_list_linkSingle($project_values['name'],$project_values['id'],1, array('project_id'=>$project_values['id']));
172
		}
Jerome Mariette's avatar
Jerome Mariette committed
173
174
		$smarty->assign('projects', $projects);
		$smarty->assign('login_user', $GLOBALS['TSFE']->loginUser);
175
		$smarty->assign('user_id', $GLOBALS['TSFE']->fe_user->user['uid']);
Jerome Mariette's avatar
Jerome Mariette committed
176
177
		$smarty->assign('data_folder', $this->conf["data"]);
		$smarty->assign('server_name', $this->conf["server_name"]);
178
		$smarty->assign('project_ids', substr($project_ids,0,-1));
179

Jerome Mariette's avatar
Jerome Mariette committed
180
181
		// If it's a single project, add runs and analysis information
		if (count($projects) == 1) {
Jerome Mariette's avatar
Jerome Mariette committed
182

Jerome Mariette's avatar
Jerome Mariette committed
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
			// Get all users on project
			$project_users = tx_nG6_db::get_all_users_on_project($projects[key($projects)]['id']);
			$smarty->assign('project_users', $project_users);
			
			// test current user
			if (tx_nG6_db::is_project_administrator($GLOBALS['TSFE']->fe_user->user['uid'], $projects[key($projects)]['id']) ) {
				$smarty->assign('current_user_is_project_admin', true);
			}else{
				$smarty->assign('current_user_is_project_admin', false);
			}
			
			if (tx_nG6_db::is_project_manager($GLOBALS['TSFE']->fe_user->user['uid'], $projects[key($projects)]['id']) ) {
				$smarty->assign('current_user_is_project_manager', true);
			}else{
				$smarty->assign('current_user_is_project_manager', false);
			}

			if (tx_nG6_db::is_project_member($GLOBALS['TSFE']->fe_user->user['uid'], $projects[key($projects)]['id']) ) {
				$smarty->assign('current_user_is_project_member', true);
			}else{
				$smarty->assign('current_user_is_project_member', false);
			}
			
Jerome Mariette's avatar
Jerome Mariette committed
206
			// Add some information to the table
Jerome Mariette's avatar
Jerome Mariette committed
207
			$project_runs = tx_nG6_db::get_project_runs($GLOBALS['TSFE']->fe_user->user['uid'], $projects[key($projects)]['id']);
Jerome Mariette's avatar
Jerome Mariette committed
208
			foreach($project_runs as $run_id => $run_values) {
209
				if (tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'run', $run_values['id']) ) {
Jerome Mariette's avatar
Jerome Mariette committed
210
					$project_runs[$run_id]['is_run_admin'] = true;
Jerome Mariette's avatar
Jerome Mariette committed
211
				} else {
Jerome Mariette's avatar
Jerome Mariette committed
212
					$project_runs[$run_id]['is_run_admin'] = false;
Jerome Mariette's avatar
Jerome Mariette committed
213
214
				}
				$project_runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id'], 'project_id'=>$run_values['project_id']));
215
			}
Jerome Mariette's avatar
Jerome Mariette committed
216
			$smarty->assign('project_runs', $project_runs);
217
			$project_analysis = tx_nG6_db::get_project_analysis($GLOBALS['TSFE']->fe_user->user['uid'], $projects[key($projects)]['id']);
Jerome Mariette's avatar
Jerome Mariette committed
218
219
			
			
Jerome Mariette's avatar
Jerome Mariette committed
220
221
			// Add some information to the table
			foreach($project_analysis as $analysis_id => $analysis_values) {
222
				if (tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'analyze', $analysis_values['id']) ) {
Jerome Mariette's avatar
Jerome Mariette committed
223
					$project_analysis[$analysis_id]['is_analyze_admin'] = true;
Jerome Mariette's avatar
Jerome Mariette committed
224
				} else {
Jerome Mariette's avatar
Jerome Mariette committed
225
					$project_analysis[$analysis_id]['is_analyze_admin'] = false;
Jerome Mariette's avatar
Jerome Mariette committed
226
				}
227
				$project_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'project_id'=>$this->piVars['project_id']));
Jerome Mariette's avatar
Jerome Mariette committed
228
			}
Jerome Mariette's avatar
Jerome Mariette committed
229
			$smarty->assign('h_project_analysis', tx_nG6_utils::trace_hierarchy($project_analysis));
Jerome Mariette's avatar
Jerome Mariette committed
230
			$smarty->assign('project_analysis', $project_analysis);
231
232
		}	
		
Jerome Mariette's avatar
Jerome Mariette committed
233
234
235
236
		if (isset($this->LOCAL_LANG[$this->LLkey]) && count($this->LOCAL_LANG[$this->LLkey]) > 0) {
			$smarty->assign('llang', $this->LOCAL_LANG[$this->LLkey]);
		} else {
			$smarty->assign('llang', $this->LOCAL_LANG['default']);
Jerome Mariette's avatar
Jerome Mariette committed
237
		}
Jerome Mariette's avatar
Jerome Mariette committed
238
		return $smarty->fetch('project_view.tpl');
Jerome Mariette's avatar
Jerome Mariette committed
239
	}
240
	
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
241

Jerome Mariette's avatar
Jerome Mariette committed
242
	/**
Jerome Mariette's avatar
Jerome Mariette committed
243
	 * Return the run view
Jerome Mariette's avatar
Jerome Mariette committed
244
	 */
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
245
    function pi_run_view() {
246

Jerome Mariette's avatar
Jerome Mariette committed
247
248
249
250
251
		$runs = array();
		// If a single element
		if ($this->piVars['run_id']) {
			$runs = array('run_'.$this->piVars['run_id'] => tx_nG6_db::select_run($this->piVars['run_id']));
		} else {
252
			$runs = tx_nG6_db::select_all_user_runs($GLOBALS['TSFE']->fe_user->user['uid']);
Jerome Mariette's avatar
Jerome Mariette committed
253
		}
Jerome Mariette's avatar
Jerome Mariette committed
254
255
256
257
258
259
260
		$smarty = new Smarty();
		$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1');
		$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
		$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
		$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
		$smarty->security = true;
		$smarty->security_settings['MODIFIER_FUNCS'] = array('count');
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
261

Jerome Mariette's avatar
Jerome Mariette committed
262
		// Add some information to the table
263
		$run_ids = "";
264
		foreach($runs as $run_id => $run_values) {
265
			if (tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'run', $run_values['id']) ) {
Jerome Mariette's avatar
Jerome Mariette committed
266
				$runs[$run_id]['is_admin'] = true;
Jerome Mariette's avatar
Jerome Mariette committed
267
			} else {
Jerome Mariette's avatar
Jerome Mariette committed
268
				$runs[$run_id]['is_admin'] = false;
269
			}
270
			$run_ids .= $run_values['id'].",";
Jerome Mariette's avatar
Jerome Mariette committed
271
272
273
274
			if ($this->piVars['project_id']) {
				$runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id'], 'project_id'=>$run_values['project_id']));	
			} else {
				$runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id']));
Jerome Mariette's avatar
Jerome Mariette committed
275
			}
276
		}
Jerome Mariette's avatar
Jerome Mariette committed
277
278
279
		$smarty->assign('runs', $runs);
		$smarty->assign('first_id', key($runs));
		$smarty->assign('login_user', $GLOBALS['TSFE']->loginUser);
280
		$smarty->assign('user_id', $GLOBALS['TSFE']->fe_user->user['uid']);
Jerome Mariette's avatar
Jerome Mariette committed
281
282
		$smarty->assign('data_folder', $this->conf["data"]);
		$smarty->assign('server_name', $this->conf["server_name"]);
283
		$smarty->assign('run_ids', substr($run_ids,0,-1));
284
		
Jerome Mariette's avatar
Jerome Mariette committed
285
286
		// If it's a single run, add analysis information
		if (count($runs) == 1) {
287
			$run_analysis = tx_nG6_db::get_run_analysis($GLOBALS['TSFE']->fe_user->user['uid'], $runs[key($runs)]['id']);
Jerome Mariette's avatar
Jerome Mariette committed
288
289
			// Add some information to the table
			foreach($run_analysis as $analysis_id => $analysis_values) {
290
				if (tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'analyze', $analysis_values['id']) ) {
Jerome Mariette's avatar
Jerome Mariette committed
291
					$run_analysis[$analysis_id]['is_admin'] = true;
Jerome Mariette's avatar
Jerome Mariette committed
292
				} else {
Jerome Mariette's avatar
Jerome Mariette committed
293
					$run_analysis[$analysis_id]['is_admin'] = false;
Jerome Mariette's avatar
Jerome Mariette committed
294
295
296
297
298
				}
				if ($this->piVars['project_id']) {
					$run_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'project_id'=>$this->piVars['project_id'], 'run_id'=>$this->piVars['run_id']));
				} else {
					$run_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'run_id'=>$this->piVars['run_id']));
Jerome Mariette's avatar
Jerome Mariette committed
299
300
				}
			}
Jerome Mariette's avatar
Jerome Mariette committed
301
			$smarty->assign('h_run_analysis', tx_nG6_utils::trace_hierarchy($run_analysis));
Jerome Mariette's avatar
Jerome Mariette committed
302
			$smarty->assign('run_analysis', $run_analysis);
Jerome Mariette's avatar
Jerome Mariette committed
303
		}
Jerome Mariette's avatar
Jerome Mariette committed
304
305
		if (isset($this->LOCAL_LANG[$this->LLkey]) && count($this->LOCAL_LANG[$this->LLkey]) > 0) {
			$smarty->assign('llang', $this->LOCAL_LANG[$this->LLkey]);
Jerome Mariette's avatar
Jerome Mariette committed
306
		} else {
Jerome Mariette's avatar
Jerome Mariette committed
307
308
309
			$smarty->assign('llang', $this->LOCAL_LANG['default']);
		}			
		return $smarty->fetch('run_view.tpl');
310
311
	}
	
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
312

Jerome Mariette's avatar
Jerome Mariette committed
313
	/**
Jerome Mariette's avatar
Jerome Mariette committed
314
	 * Return the analysis view
Jerome Mariette's avatar
Jerome Mariette committed
315
	 */
Jerome Mariette's avatar
Jerome Mariette committed
316
	function pi_analyze_view() {
317
		// First select the analyse
Jerome Mariette's avatar
Jerome Mariette committed
318
		$analyse = tx_nG6_db::select_analyse($this->piVars['analyze_id']);
Jerome Mariette's avatar
Jerome Mariette committed
319
		
320
321
322
323
324
325
326
327
328
329
		// Handle old fashion
		if (file_exists($this->conf['data'].$analyse['directory'].'/index.html' )) {
			// Add the analyse description
			$content = '<div id="img_dialog" title=""></div>';
			$content .= '<input type="hidden" id="analyse_name" value="'.$analyse['name'].'" />';
			$content .= '<div'.$this->pi_classParam('singleView').'>';
			$content .= '<h2>Analyse '.$analyse['name'].' : <span>'.$analyse['description'].'</span></h2></div>';
			$fp = fopen((string)$this->conf['data'].$analyse['directory'].'/index.html',"r");
			while (!feof($fp)) {
				$content .= fgets($fp, 4096);
Jerome Mariette's avatar
Jerome Mariette committed
330
			}
331
			return $content;
332
		// Else meaning using smarty
Jerome Mariette's avatar
Jerome Mariette committed
333
		} else {
334
335
336
337
338
339
340
341
342
343
			
			$smarty = new Smarty();
			$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1/analyzes');
			$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
			$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
			$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
			$smarty->security = true;
			$smarty->security_settings['MODIFIER_FUNCS'] = array('count');

			$smarty->assign('analyse', $analyse);
344
345
			$analysis_size = tx_nG6_db::get_analysis_size($this->piVars['analyze_id'], $this->conf['data']);
			$smarty->assign('analyse_size', tx_nG6_utils::get_octet_string_representation($analysis_size));
Jerome Mariette's avatar
Jerome Mariette committed
346
			$smarty->assign('data_folder', $this->conf["data"]);
347
348
			
			// Then select analyse results
Jerome Mariette's avatar
Jerome Mariette committed
349
			$results = tx_nG6_db::select_analyse_results($this->piVars['analyze_id']);		
350
351
352
353
354
355
356
357
358
359
			$smarty->assign('analyse_results', $results);
			
			// Select the run file description	
			if ($analyse['run_id'] != 'None') {
				$descriptions = tx_nG6_db::select_mid_descriptions($analyse['run_id']);
			} else {
				$descriptions = array();
			}
			$smarty->assign('descriptions', $descriptions);
			$smarty->assign('data_folder', $this->conf['data']);
Jerome Mariette's avatar
Jerome Mariette committed
360
			if (isset($this->LOCAL_LANG[$this->LLkey]) && count($this->LOCAL_LANG[$this->LLkey]) > 0) {
361
362
363
364
365
				$smarty->assign('llang', $this->LOCAL_LANG[$this->LLkey]);
			} else {
				$smarty->assign('llang', $this->LOCAL_LANG['default']);
			}			
			// Try to process the analyse template
366
367
			try {
				if (file_exists(t3lib_extMgm::extPath($this->extKey).'pi1/analyzes/'.$analyse['class'].'.js')) {
Jerome Mariette's avatar
Jerome Mariette committed
368
					$GLOBALS['TSFE']->additionalHeaderData[$this->prefixId] .= '<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'pi1/analyzes/'.$analyse['class'].'.js"></script>';
369
370
371
372
373
				}
				return $smarty->fetch($analyse['class'].'.tpl'); 
			} catch (Exception $e) { 
				return str_replace(array('###ANALYSE_CLASS###'), array($analyse['class']), $this->pi_getLL('no_template_found','[no_template_found:###ANALYSE_CLASS###]')); 
			}
Jerome Mariette's avatar
Jerome Mariette committed
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
		}
	}
	
	/**
	 * Overloading of the tslib_pibase->pi_list_linkSingle function so piVars[showUid] is not set.
	 * Uses pi_linkTP for the linking
	 *
	 * @param	string		The content string to wrap in <a> tags
	 * @param	integer		UID of the record for which to display details (basically this will become the value of [showUid]
	 * @param	boolean		See pi_linkTP_keepPIvars
	 * @param	array		Array of values to override in the current piVars. Same as $overrulePIvars in pi_linkTP_keepPIvars
	 * @param	boolean		If true, only the URL is returned, not a full link
	 * @param	integer		Alternative page ID for the link. (By default this function links to the SAME page!)
	 * @return	string		The input string wrapped in <a> tags
	 * @see pi_linkTP(), pi_linkTP_keepPIvars()
	 */
	function pi_list_linkSingle($str,$uid,$cache=FALSE,$mergeArr=array(),$urlOnly=FALSE,$altPageId=0)	{
		if ($this->prefixId)	{
			if ($cache)	{
				$overrulePIvars=(array)$mergeArr;
				$str = $this->pi_linkTP($str,Array($this->prefixId=>$overrulePIvars),$cache,$altPageId);
			} else {
				$overrulePIvars=(array)$mergeArr;
				$str = $this->pi_linkTP_keepPIvars($str,$overrulePIvars,$cache,0,$altPageId);
			}

				// If urlOnly flag, return only URL as it has recently be generated.
			if ($urlOnly)	{
				$str = $this->cObj->lastTypoLinkUrl;
			}
		}
		return $str;
	}
407
	
Jerome Mariette's avatar
Jerome Mariette committed
408
409
410
411
412
413
}

if (defined('TYPO3_MODE') && $TYPO3_CONF_VARS[TYPO3_MODE]['XCLASS']['ext/nG6/pi1/class.tx_nG6_pi1.php'])	{
	include_once($TYPO3_CONF_VARS[TYPO3_MODE]['XCLASS']['ext/nG6/pi1/class.tx_nG6_pi1.php']);
}

414
?>