class.tx_nG6_pi1.php 19.1 KB
Newer Older
Jerome Mariette's avatar
Jerome Mariette committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
<?php
/***************************************************************
*  Copyright notice
*
*  (c) 2009 PF bioinformatique de Toulouse <>
*  All rights reserved
*
*  This script is part of the TYPO3 project. The TYPO3 project is
*  free software; you can redistribute it and/or modify
*  it under the terms of the GNU General Public License as published by
*  the Free Software Foundation; either version 2 of the License, or
*  (at your option) any later version.
*
*  The GNU General Public License can be found at
*  http://www.gnu.org/copyleft/gpl.html.
*
*  This script is distributed in the hope that it will be useful,
*  but WITHOUT ANY WARRANTY; without even the implied warranty of
*  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*  GNU General Public License for more details.
*
*  This copyright notice MUST APPEAR in all copies of the script!
***************************************************************/
/**
 * Plugin 'nG6' for the 'nG6' extension.
 *
 * @author	PF bioinformatique de Toulouse <>
 */

require_once(PATH_tslib.'class.tslib_pibase.php');
31
32
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_db.php');
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_utils.php');
33
require_once(t3lib_extMgm::extPath('nG6').'/lib/class.tx_nG6_upgrade.php');
34
require_once(t3lib_extMgm::extPath('nG6').'/res/smarty/libs/Smarty.class.php'); 
Jerome Mariette's avatar
Jerome Mariette committed
35
36

class tx_nG6_pi1 extends tslib_pibase {
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
37
	
Jerome Mariette's avatar
Jerome Mariette committed
38
39
40
41
42
43
44
45
46
47
48
49
	var $prefixId = 'tx_nG6_pi1';		// Same as class name
	var $scriptRelPath = 'pi1/class.tx_nG6_pi1.php';	// Path to this script relative to the extension dir.
	var $extKey = 'nG6';	// The extension key.
	
	/**
	 * Main method of your PlugIn
	 *
	 * @param	string		$content: The content of the PlugIn
	 * @param	array		$conf: The PlugIn Configuration
	 * @return	The content that should be displayed on the website
	 */
	function main($content,$conf)	{
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
50
		
Jerome Mariette's avatar
Jerome Mariette committed
51
52
53
		if (strstr($this->cObj->currentRecord,'tt_content'))	{
			$conf['pidList'] = $this->cObj->data['pages'];
		}
Jerome Mariette's avatar
Jerome Mariette committed
54
55
		// Setting the TypoScript passed to this function in $this->conf
		$this->conf=$conf;
56
		
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
57
		$this->pi_setPiVarDefaults();
Jerome Mariette's avatar
Jerome Mariette committed
58
59
60
		// Configuring so caching is not expected. This value means that no cHash params are ever set. We do this, because it's a USER_INT object!
		$this->pi_USER_INT_obj=1;
		// Loading the LOCAL_LANG values
61
62
		$this->pi_loadLL();		
		
63
		// Add the ng6 plugins css
Jerome Mariette's avatar
Jerome Mariette committed
64
		$GLOBALS['TSFE']->additionalHeaderData[$this->prefixId] = '
Jerome Mariette's avatar
Jerome Mariette committed
65
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery-1.7.2.min.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
66
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.core.min.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
67
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap.min.js"></script>
68
69
70
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.cookie.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.hotkeys.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.jstree.min.js"></script>
Jerome Mariette's avatar
Jerome Mariette committed
71
72
73
74
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.dialog.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.draggable.min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.resizable.min.js"></script> 
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.bgiframe.min.js"></script>
75
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.dataTables.min.js"></script>
philippe's avatar
philippe committed
76
77
78
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/DT_bootstrap.js"></script>			
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-editable.min.js"></script>			
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-datepicker.js"></script>			
Jerome Mariette's avatar
Jerome Mariette committed
79
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.url.packed.js"></script>
80
81
			
			
Jerome Mariette's avatar
Jerome Mariette committed
82
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_pi1.js"></script>
83
84
85
86
87
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_utils.js"></script>
			<script type="text/javascript" src="typo3/md5.js"></script>		
					
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_pi1_analysis.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.venny.js"></script>		
Jerome Mariette's avatar
Jerome Mariette committed
88
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.highcharts.js"></script>
89
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.highcharts.exporting.js"></script>		
Jerome Mariette's avatar
Jerome Mariette committed
90
91
92
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jsphylosvg-min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/raphael-min.js"></script>
			<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/unitip.js"></script>
93
			
Jerome Mariette's avatar
Jerome Mariette committed
94
					
Jerome Mariette's avatar
Jerome Mariette committed
95
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/unitip.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
96
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap.min.css"/>
philippe's avatar
philippe committed
97
98
99
100
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-responsive.min.css"/>
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/DT_bootstrap.css"/>			
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-editable.css"/>			
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/datepicker.css"/>			
Jerome Mariette's avatar
Jerome Mariette committed
101
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.venny.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
102
103
104
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/tx_nG6.css"/>
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.core.css"/>
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.theme.css"/>
105
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.dialog.css"/>
Jerome Mariette's avatar
Jerome Mariette committed
106
107
			<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jquery.ui.resizable.css"/>';			
		
108
109
		tx_nG6_db::check_db_rights_level();

Jerome Mariette's avatar
Jerome Mariette committed
110
		// if asked to upgrade to version 1.2
111
112
113
		if($this->piVars['upgrade']){
			$content = tx_nG6_upgrade::upgrade($this->piVars['upgrade']);
		} else {
Jerome Mariette's avatar
Jerome Mariette committed
114
115
116
117
118
119
120
121
122
123
124
			switch((string)$this->conf['view'])	{
				// If the plugin is configured to display results by run
				case 'run':
					if ($this->piVars['analyze_id']) {
						$content .= $this->pi_analyze_view();
					} else {
						$content .= $this->pi_run_view();
					}
					break;
				// If the plugin is not configured, display by project is default
				default:
125
126
127
128
129
130
131
					if ($this->piVars['analyze_id']) {
						$content .= $this->pi_analyze_view();
					} elseif ($this->piVars['project_id'] && $this->piVars['run_id']) {
						$content .= $this->pi_run_view();
					} else {
						$content .= $this->pi_project_view();
					}
Jerome Mariette's avatar
Jerome Mariette committed
132
					break;
Jerome Mariette's avatar
Jerome Mariette committed
133
134
			}
		}
Jerome Mariette's avatar
Jerome Mariette committed
135
		return $this->pi_wrapInBaseClass($content);
Jerome Mariette's avatar
Jerome Mariette committed
136
	}
Jerome Mariette's avatar
Jerome Mariette committed
137

Jerome Mariette's avatar
Jerome Mariette committed
138
	/**
Jerome Mariette's avatar
Jerome Mariette committed
139
	 * Return the project view
Jerome Mariette's avatar
Jerome Mariette committed
140
	 */
Jerome Mariette's avatar
Jerome Mariette committed
141
	function pi_project_view()	{		
Jerome Mariette's avatar
Jerome Mariette committed
142
		$projects = array();
Jerome Mariette's avatar
Jerome Mariette committed
143
144
145
146
		
		if (!$GLOBALS['TSFE']->loginUser) { $user_id = null; }
		else { $user_id = $GLOBALS['TSFE']->fe_user->user['uid']; }
		
Jerome Mariette's avatar
Jerome Mariette committed
147
148
		// If a single element
		if ($this->piVars['project_id']) {
Jerome Mariette's avatar
Jerome Mariette committed
149
150
151
			if (tx_nG6_db::user_is_authorized($user_id, $this->piVars['project_id'], $this->piVars['run_id'])) {
				$projects = array('project_'.$this->piVars['project_id'] => tx_nG6_db::select_project($this->piVars['project_id']));
			}
Jerome Mariette's avatar
Jerome Mariette committed
152
		} else {
Jerome Mariette's avatar
Jerome Mariette committed
153
			$projects = tx_nG6_db::select_all_user_projects($user_id, 'tx_nG6_project.name');
Jerome Mariette's avatar
Jerome Mariette committed
154
		}
Jerome Mariette's avatar
Jerome Mariette committed
155
156
157
158
159
160
161
162
163
164
		
		// If there is no project the user can access
		if (count($projects) > 0) {
			$smarty = new Smarty();
			$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1');
			$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
			$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
			$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
			$smarty->security = true;
			$smarty->security_settings['MODIFIER_FUNCS'] = array('count');		
Jerome Mariette's avatar
Jerome Mariette committed
165
			// Add some information to the table
Jerome Mariette's avatar
Jerome Mariette committed
166
167
168
169
170
171
172
173
174
175
176
			$project_ids = "";
			foreach($projects as $project_id => $project_values) {
				// project admin ?
				$projects[$project_id]['is_admin'] = tx_nG6_db::is_project_administrator($GLOBALS['TSFE']->fe_user->user['uid'], $project_values['id']);
				// project manager ?
				$projects[$project_id]['is_manager'] = tx_nG6_db::is_project_manager($GLOBALS['TSFE']->fe_user->user['uid'], $project_values['id']);
				// project member ?
				$projects[$project_id]['is_member'] = tx_nG6_db::is_project_member($GLOBALS['TSFE']->fe_user->user['uid'], $project_values['id']);
				
				$project_ids .= $project_values['id'].",";
				$projects[$project_id]['href'] = $this->pi_list_linkSingle($project_values['name'],$project_values['id'],1, array('project_id'=>$project_values['id']));
Jerome Mariette's avatar
Jerome Mariette committed
177
			}
Jerome Mariette's avatar
Jerome Mariette committed
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
			$smarty->assign('projects', $projects);
			$smarty->assign('login_user', $GLOBALS['TSFE']->loginUser);
			$smarty->assign('user_id', $GLOBALS['TSFE']->fe_user->user['uid']);
			$smarty->assign('data_folder', $this->conf["data"]);
			$smarty->assign('from_email', $this->conf["FromEmail"]);
			$smarty->assign('server_name', $this->conf["server_name"]);
			$smarty->assign('project_ids', substr($project_ids,0,-1));
			$smarty->assign('pid', $this->conf['userpidList']);
	
			// If it's a single project, add runs and analysis information
			if (count($projects) == 1) {
	
				// Get all users on project
				$project_users = tx_nG6_db::get_all_users_on_project($projects[key($projects)]['id']);
				$smarty->assign('project_users', $project_users);
	
				// Add some information to the table
				$project_runs = tx_nG6_db::get_project_runs($projects[key($projects)]['id']);
				foreach($project_runs as $run_id => $run_values) {
					$project_runs[$run_id]['is_admin'] = tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'run', $run_values['id']);
					$project_runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id'], 'project_id'=>$run_values['project_id']));
				}
				$smarty->assign('project_runs', $project_runs);
				$project_analysis = tx_nG6_db::get_project_analysis($projects[key($projects)]['id']);
				
				// Add some information to the table
				foreach($project_analysis as $analysis_id => $analysis_values) {
					$project_analysis[$analysis_id]['is_admin'] = tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'analyze', $analysis_values['id']);
					$project_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'project_id'=>$this->piVars['project_id']));
				}
				$smarty->assign('h_project_analysis', tx_nG6_utils::trace_hierarchy($project_analysis));
				$smarty->assign('project_analysis', $project_analysis);
			}	
			return $smarty->fetch('project_view.tpl');
		} else {
philippe's avatar
philippe committed
213
			return "<div class='alert alert-error'><b>Access denied</b> - You are not authorized to access this page.</div>";
Jerome Mariette's avatar
Jerome Mariette committed
214
		}
Jerome Mariette's avatar
Jerome Mariette committed
215
	}
216
	
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
217

Jerome Mariette's avatar
Jerome Mariette committed
218
	/**
Jerome Mariette's avatar
Jerome Mariette committed
219
	 * Return the run view
Jerome Mariette's avatar
Jerome Mariette committed
220
	 */
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
221
    function pi_run_view() {
222

Jerome Mariette's avatar
Jerome Mariette committed
223
		$runs = array();
Jerome Mariette's avatar
Jerome Mariette committed
224
225
226
		if (!$GLOBALS['TSFE']->loginUser) { $user_id = null; }
		else { $user_id = $GLOBALS['TSFE']->fe_user->user['uid']; }
		
Jerome Mariette's avatar
Jerome Mariette committed
227
228
		// If a single element
		if ($this->piVars['run_id']) {
Jerome Mariette's avatar
Jerome Mariette committed
229
230
231
			if (tx_nG6_db::user_is_authorized($user_id, $this->piVars['project_id'], $this->piVars['run_id'])) {
				$runs = array('run_'.$this->piVars['run_id'] => tx_nG6_db::select_run($this->piVars['run_id']));
			}
Jerome Mariette's avatar
Jerome Mariette committed
232
		} else {
Jerome Mariette's avatar
Jerome Mariette committed
233
			$runs = tx_nG6_db::select_all_user_runs($user_id);
Jerome Mariette's avatar
Jerome Mariette committed
234
		}
235
		
Jerome Mariette's avatar
Jerome Mariette committed
236
237
238
239
240
241
242
243
244
		if (count($runs) > 0) {
			$smarty = new Smarty();
			$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1');
			$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
			$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
			$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
			$smarty->security = true;
			$smarty->security_settings['MODIFIER_FUNCS'] = array('count');
	
Jerome Mariette's avatar
Jerome Mariette committed
245
			// Add some information to the table
Jerome Mariette's avatar
Jerome Mariette committed
246
247
248
249
250
251
252
253
			$run_ids = "";
			foreach($runs as $run_id => $run_values) {
				if (tx_nG6_db::is_administrator($user_id, 'run', $run_values['id']) ) {
					$runs[$run_id]['is_admin'] = true;
				} else {
					$runs[$run_id]['is_admin'] = false;
				}
				$run_ids .= $run_values['id'].",";
Jerome Mariette's avatar
Jerome Mariette committed
254
				if ($this->piVars['project_id']) {
Jerome Mariette's avatar
Jerome Mariette committed
255
					$runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id'], 'project_id'=>$run_values['project_id']));	
Jerome Mariette's avatar
Jerome Mariette committed
256
				} else {
Jerome Mariette's avatar
Jerome Mariette committed
257
					$runs[$run_id]['href'] = $this->pi_list_linkSingle($run_values['name'],$run_values['id'],1, array('run_id'=>$run_values['id']));
Jerome Mariette's avatar
Jerome Mariette committed
258
259
				}
			}
Jerome Mariette's avatar
Jerome Mariette committed
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
			$smarty->assign('runs', $runs);
			$smarty->assign('login_user', $GLOBALS['TSFE']->loginUser);
			$smarty->assign('user_id', $GLOBALS['TSFE']->fe_user->user['uid']);
			$smarty->assign('data_folder', $this->conf["data"]);
			$smarty->assign('server_name', $this->conf["server_name"]);
			$smarty->assign('run_ids', substr($run_ids,0,-1));
			
			// If it's a single run, add analysis information
			if (count($runs) == 1) {
				$run_analysis = tx_nG6_db::get_run_analysis($runs[key($runs)]['id']);
				// Add some information to the table
				foreach($run_analysis as $analysis_id => $analysis_values) {
					$run_analysis[$analysis_id]['is_admin'] = tx_nG6_db::is_administrator($GLOBALS['TSFE']->fe_user->user['uid'], 'analyze', $analysis_values['id']);
					if ($this->piVars['project_id']) {
						$run_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'project_id'=>$this->piVars['project_id'], 'run_id'=>$this->piVars['run_id']));
					} else {
						$run_analysis[$analysis_id]['href'] = $this->pi_list_linkSingle($analysis_values['name'],$analysis_values['id'],1, array('analyze_id'=>$analysis_values['id'], 'run_id'=>$this->piVars['run_id']));
					}
				}
				$smarty->assign('h_run_analysis', tx_nG6_utils::trace_hierarchy($run_analysis));
				$smarty->assign('run_analysis', $run_analysis);
			}		
			return $smarty->fetch('run_view.tpl');
		} else {
philippe's avatar
philippe committed
284
			return "<div class='alert alert-error'><b>Access denied</b> - You are not authorized to access this page.</div>";
Jerome Mariette's avatar
Jerome Mariette committed
285
		}
286
287
	}
	
Jerome Mariette's avatar
sql ok    
Jerome Mariette committed
288

Jerome Mariette's avatar
Jerome Mariette committed
289
	/**
Jerome Mariette's avatar
Jerome Mariette committed
290
	 * Return the analysis view
Jerome Mariette's avatar
Jerome Mariette committed
291
	 */
Jerome Mariette's avatar
Jerome Mariette committed
292
	function pi_analyze_view() {
293
		// First select the analyse
Jerome Mariette's avatar
Jerome Mariette committed
294
		$analyse = tx_nG6_db::select_analyse($this->piVars['analyze_id']);
Jerome Mariette's avatar
Jerome Mariette committed
295
		
296
297
298
299
300
301
302
303
304
305
		// Handle old fashion
		if (file_exists($this->conf['data'].$analyse['directory'].'/index.html' )) {
			// Add the analyse description
			$content = '<div id="img_dialog" title=""></div>';
			$content .= '<input type="hidden" id="analyse_name" value="'.$analyse['name'].'" />';
			$content .= '<div'.$this->pi_classParam('singleView').'>';
			$content .= '<h2>Analyse '.$analyse['name'].' : <span>'.$analyse['description'].'</span></h2></div>';
			$fp = fopen((string)$this->conf['data'].$analyse['directory'].'/index.html',"r");
			while (!feof($fp)) {
				$content .= fgets($fp, 4096);
Jerome Mariette's avatar
Jerome Mariette committed
306
			}
307
			return $content;
308
		// Else meaning using smarty
Jerome Mariette's avatar
Jerome Mariette committed
309
		} else {
310
311
312
313
314
315
316
317
318
319
			
			$smarty = new Smarty();
			$smarty->setTemplateDir(t3lib_extMgm::extPath('nG6').'/pi1/analyzes');
			$smarty->setCompileDir(t3lib_extMgm::extPath('nG6').'/res/smarty/templates_c');
			$smarty->setCacheDir(t3lib_extMgm::extPath('nG6').'/res/smarty/cache');
			$smarty->setConfigDir(t3lib_extMgm::extPath('nG6').'/res/smarty/configs');
			$smarty->security = true;
			$smarty->security_settings['MODIFIER_FUNCS'] = array('count');

			$smarty->assign('analyse', $analyse);
320
321
			$analysis_size = tx_nG6_db::get_analysis_size($this->piVars['analyze_id'], $this->conf['data']);
			$smarty->assign('analyse_size', tx_nG6_utils::get_octet_string_representation($analysis_size));
Jerome Mariette's avatar
Jerome Mariette committed
322
			$smarty->assign('data_folder', $this->conf["data"]);
323
324
			
			// Then select analyse results
Jerome Mariette's avatar
Jerome Mariette committed
325
			$results = tx_nG6_db::select_analyse_results($this->piVars['analyze_id']);		
326
327
328
329
330
331
332
333
334
			$smarty->assign('analyse_results', $results);
			
			// Select the run file description	
			if ($analyse['run_id'] != 'None') {
				$descriptions = tx_nG6_db::select_mid_descriptions($analyse['run_id']);
			} else {
				$descriptions = array();
			}
			$smarty->assign('descriptions', $descriptions);
335
			$smarty->assign('data_folder', $this->conf['data']);		
336
			// Try to process the analyse template
337
338
			try {
				if (file_exists(t3lib_extMgm::extPath($this->extKey).'pi1/analyzes/'.$analyse['class'].'.js')) {
Jerome Mariette's avatar
Jerome Mariette committed
339
					$GLOBALS['TSFE']->additionalHeaderData[$this->prefixId] .= '<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'pi1/analyzes/'.$analyse['class'].'.js"></script>';
340
341
342
				}
				return $smarty->fetch($analyse['class'].'.tpl'); 
			} catch (Exception $e) { 
Jerome Mariette's avatar
Jerome Mariette committed
343
				return 'No template found for class ' . $analyse['class'];
344
			}
Jerome Mariette's avatar
Jerome Mariette committed
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
		}
	}
	
	/**
	 * Overloading of the tslib_pibase->pi_list_linkSingle function so piVars[showUid] is not set.
	 * Uses pi_linkTP for the linking
	 *
	 * @param	string		The content string to wrap in <a> tags
	 * @param	integer		UID of the record for which to display details (basically this will become the value of [showUid]
	 * @param	boolean		See pi_linkTP_keepPIvars
	 * @param	array		Array of values to override in the current piVars. Same as $overrulePIvars in pi_linkTP_keepPIvars
	 * @param	boolean		If true, only the URL is returned, not a full link
	 * @param	integer		Alternative page ID for the link. (By default this function links to the SAME page!)
	 * @return	string		The input string wrapped in <a> tags
	 * @see pi_linkTP(), pi_linkTP_keepPIvars()
	 */
	function pi_list_linkSingle($str,$uid,$cache=FALSE,$mergeArr=array(),$urlOnly=FALSE,$altPageId=0)	{
		if ($this->prefixId)	{
			if ($cache)	{
				$overrulePIvars=(array)$mergeArr;
				$str = $this->pi_linkTP($str,Array($this->prefixId=>$overrulePIvars),$cache,$altPageId);
			} else {
				$overrulePIvars=(array)$mergeArr;
				$str = $this->pi_linkTP_keepPIvars($str,$overrulePIvars,$cache,0,$altPageId);
			}

				// If urlOnly flag, return only URL as it has recently be generated.
			if ($urlOnly)	{
				$str = $this->cObj->lastTypoLinkUrl;
			}
		}
		return $str;
	}
378
	
Jerome Mariette's avatar
Jerome Mariette committed
379
380
381
382
383
384
}

if (defined('TYPO3_MODE') && $TYPO3_CONF_VARS[TYPO3_MODE]['XCLASS']['ext/nG6/pi1/class.tx_nG6_pi1.php'])	{
	include_once($TYPO3_CONF_VARS[TYPO3_MODE]['XCLASS']['ext/nG6/pi1/class.tx_nG6_pi1.php']);
}

385
?>