Check input parameters

miniannotator.py

@@ -278,10 +278,15 @@ if __name__ == "__main__":
 
     args = parser.parse_args()
 
+    if args.min_qoverlap < 0 or args.min_qoverlap > 100:
+        print("Error: min qoverlap (-q/--min-qoverlap) needs to be between 0 and 100", file=sys.stderr)
+        exit(1)
+
     if not os.path.exists(args.output_dir):
         os.makedirs(args.output_dir)
     elif not os.path.isdir(args.output_dir):
         print("Error: output folder %s exists but is not a folder" % args.output_dir, file=sys.stderr)
+        exit(1)
 
     # Map:
     if args.map is None: