DSL2 version - pass to DSL2 to get 2 workflow (Short-read and HiFi) - gene are named with feature (prot/rrna) - aln2taxaffi.py refactored to use new_taxdump and prot.accession2taxid.FULL - add header in diamond output and use it while parsing - replace mosdepth by samtools coverage - replace bedtools bamtofastq by samtools fastq - check gff valididy after prokka - simplify config files - update documentation - chunk assembly to reduce process time of filtering step