- Add CI/CD
- Add direct download of Singularity containers
- Add deduplication of reads
- Add filtering of contigs
- Add functional annotation of genes + associated Singularity container
- Add quantification of reads by functional annotation
- Add first strategy of binning (adapted from nf-core/mag v1.0.0)
- Add first strategy of taxonomic affiliation of bins (from nf-core/mag v1.0.0)
- Add summary tables for taxonomic affiliation of contigs
- Add modularity of the pipeline: --step parameter
- Add documentation
- Improvement of MultiQC report: add modules into MultiQC and use of them into metagWGS
- Improve README
- Setting up configuration files
- First optimization of memory and CPU for test data
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