V1.1- Contig affilation and binning
Cf Milestone 1.0
Completed Issues (closed)
- README: add documentation about genologin module load issue
- add description column in diamond output
- Process cd-hit: 0.95 must be a parameter and delete 0.95 in file names.
- DIAMOND: taxonomy consensus contigs
- DIAMOND parser: protein id file
- README: Add informations for metaSPAdes or megahit choice
- Assembly and annotation with PROKKA
- Add fasta_length.pl to replace DESMAN Lengths.py script
- Change ouput file names
- Change y axis name kaiju graph ("normalized")
- Add title kaiju graphs
- Barplot Kaiju: code it into a Python script
- Add project communications into communications directory
- Add Singularity container
- Add comparison kaiju vs Kraken2 ?
- Add taxonomic classification of reads with Kraken2 ?
- Update readme file and documentation
- Process optimization (no creation of intermediate files)
- Delete "work" directory when the Nextflow script is finished
- Add taxonomic databases in option