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metagWGS
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genotoul-bioinfo
metagWGS
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Manual
Count number of base in fastq after cleaning
#56
· opened
Feb 13, 2020
by
Celine Noirot
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Jan 13, 2021
Replace Assemblathon by QUast
#55
· opened
Feb 13, 2020
by
Celine Noirot
V1.1- Contig affilation and binning
Enhancement
CLOSED
3
updated
Aug 14, 2020
README: Add informations for metaSPAdes or megahit choice
#27
· opened
Jul 10, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
New feature
CLOSED
2
updated
Dec 18, 2019
Add Singularity container
#25
· opened
Jul 01, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Dec 18, 2019
README: add documentation about genologin module load issue
#29
· opened
Aug 05, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Bug
Enhancement
CLOSED
2
updated
Dec 11, 2019
Change y axis name kaiju graph ("normalized")
#36
· opened
Sep 11, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Dec 10, 2019
Add title kaiju graphs
#35
· opened
Sep 11, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Dec 10, 2019
Barplot Kaiju: code it into a Python script
#34
· opened
Sep 09, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
0
updated
Dec 10, 2019
Change ouput file names
#40
· opened
Sep 11, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
4
updated
Dec 09, 2019
Process cd-hit: 0.95 must be a parameter and delete 0.95 in file names.
#47
· opened
Sep 11, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Todo
CLOSED
1
updated
Dec 09, 2019
add description column in diamond output
#49
· opened
Dec 04, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Todo
CLOSED
1
updated
Dec 09, 2019
Process optimization (no creation of intermediate files)
#17
· opened
Jun 05, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Dec 04, 2019
DIAMOND: taxonomy consensus contigs
#32
· opened
Aug 14, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
New feature
CLOSED
1
updated
Dec 04, 2019
DIAMOND parser: protein id file
#31
· opened
Aug 14, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
New feature
CLOSED
1
updated
Dec 04, 2019
Update readme file and documentation
#21
· opened
Jun 28, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
1
updated
Dec 04, 2019
Assembly and annotation with PROKKA
#6
· opened
Feb 15, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Discussion
New feature
CLOSED
2
updated
Dec 04, 2019
Add taxonomic databases in option
#3
· opened
Jan 30, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Discussion
CLOSED
1
updated
Dec 04, 2019
Add fasta_length.pl to replace DESMAN Lengths.py script
#42
· opened
Sep 11, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Enhancement
CLOSED
0
updated
Sep 19, 2019
Add taxonomic classification of reads with Kraken2 ?
#22
· opened
Jun 28, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Discussion
CLOSED
1
updated
Sep 09, 2019
Add comparison kaiju vs Kraken2 ?
#23
· opened
Jun 28, 2019
by
Joanna Fourquet
V1.1- Contig affilation and binning
Discussion
CLOSED
1
updated
Sep 09, 2019
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