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metagWGS
metagWGS
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  • genotoul-bioinfo
  • metagWGSmetagWGS
  • Issues

  • Open 0
  • Closed 22
  • All 22
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual
  • Count number of base in fastq after cleaning
    #56 · opened Feb 13, 2020 by Celine Noirot   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Jan 13, 2021
  • Replace Assemblathon by QUast
    #55 · opened Feb 13, 2020 by Celine Noirot   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 3
    updated Aug 14, 2020
  • README: Add informations for metaSPAdes or megahit choice
    #27 · opened Jul 10, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   New feature
    • CLOSED
    • 2
    updated Dec 18, 2019
  • Add Singularity container
    #25 · opened Jul 01, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Dec 18, 2019
  • README: add documentation about genologin module load issue
    #29 · opened Aug 05, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Bug Enhancement
    • CLOSED
    • 2
    updated Dec 11, 2019
  • Change y axis name kaiju graph ("normalized")
    #36 · opened Sep 11, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Dec 10, 2019
  • Add title kaiju graphs
    #35 · opened Sep 11, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Dec 10, 2019
  • Barplot Kaiju: code it into a Python script
    #34 · opened Sep 09, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 0
    updated Dec 10, 2019
  • Change ouput file names
    #40 · opened Sep 11, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 4
    updated Dec 09, 2019
  • Process cd-hit: 0.95 must be a parameter and delete 0.95 in file names.
    #47 · opened Sep 11, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Todo
    • CLOSED
    • 1
    updated Dec 09, 2019
  • add description column in diamond output
    #49 · opened Dec 04, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Todo
    • CLOSED
    • 1
    updated Dec 09, 2019
  • Process optimization (no creation of intermediate files)
    #17 · opened Jun 05, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Dec 04, 2019
  • DIAMOND: taxonomy consensus contigs
    #32 · opened Aug 14, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   New feature
    • CLOSED
    • 1
    updated Dec 04, 2019
  • DIAMOND parser: protein id file
    #31 · opened Aug 14, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   New feature
    • CLOSED
    • 1
    updated Dec 04, 2019
  • Update readme file and documentation
    #21 · opened Jun 28, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 1
    updated Dec 04, 2019
  • Assembly and annotation with PROKKA
    #6 · opened Feb 15, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Discussion New feature
    • CLOSED
    • 2
    updated Dec 04, 2019
  • Add taxonomic databases in option
    #3 · opened Jan 30, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Discussion
    • CLOSED
    • 1
    updated Dec 04, 2019
  • Add fasta_length.pl to replace DESMAN Lengths.py script
    #42 · opened Sep 11, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Enhancement
    • CLOSED
    • 0
    updated Sep 19, 2019
  • Add taxonomic classification of reads with Kraken2 ?
    #22 · opened Jun 28, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Discussion
    • CLOSED
    • 1
    updated Sep 09, 2019
  • Add comparison kaiju vs Kraken2 ?
    #23 · opened Jun 28, 2019 by Joanna Fourquet   V1.1- Contig affilation and binning   Discussion
    • CLOSED
    • 1
    updated Sep 09, 2019
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