Issues · genotoul-bioinfo / metagWGS · GitLab

README: Add informations for metaSPAdes or megahit choice

#27 · opened Jul 10, 2019 by Joanna Fourquet V1.1- Contig affilation and binning New feature
- CLOSED
- 2
updated Dec 18, 2019
Add Singularity container

#25 · opened Jul 01, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 1
updated Dec 18, 2019
README: add documentation about genologin module load issue

#29 · opened Aug 05, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Bug Enhancement
- CLOSED
- 2
updated Dec 11, 2019
Change y axis name kaiju graph ("normalized")

#36 · opened Sep 11, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 1
updated Dec 10, 2019
Add title kaiju graphs

#35 · opened Sep 11, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 1
updated Dec 10, 2019
Barplot Kaiju: code it into a Python script

#34 · opened Sep 09, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 0
updated Dec 10, 2019
Change ouput file names

#40 · opened Sep 11, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 4
updated Dec 09, 2019
Process cd-hit: 0.95 must be a parameter and delete 0.95 in file names.

#47 · opened Sep 11, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Todo
- CLOSED
- 1
updated Dec 09, 2019
add description column in diamond output

#49 · opened Dec 04, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Todo
- CLOSED
- 1
updated Dec 09, 2019
Process optimization (no creation of intermediate files)

#17 · opened Jun 05, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 1
updated Dec 04, 2019
DIAMOND: taxonomy consensus contigs

#32 · opened Aug 14, 2019 by Joanna Fourquet V1.1- Contig affilation and binning New feature
- CLOSED
- 1
updated Dec 04, 2019
DIAMOND parser: protein id file

#31 · opened Aug 14, 2019 by Joanna Fourquet V1.1- Contig affilation and binning New feature
- CLOSED
- 1
updated Dec 04, 2019
Update readme file and documentation

#21 · opened Jun 28, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 1
updated Dec 04, 2019
Assembly and annotation with PROKKA

#6 · opened Feb 15, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Discussion New feature
- CLOSED
- 2
updated Dec 04, 2019
Add taxonomic databases in option

#3 · opened Jan 30, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Discussion
- CLOSED
- 1
updated Dec 04, 2019
Add fasta_length.pl to replace DESMAN Lengths.py script

#42 · opened Sep 11, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 0
updated Sep 19, 2019
Add taxonomic classification of reads with Kraken2 ?

#22 · opened Jun 28, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Discussion
- CLOSED
- 1
updated Sep 09, 2019
Add comparison kaiju vs Kraken2 ?

#23 · opened Jun 28, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Discussion
- CLOSED
- 1
updated Sep 09, 2019
Delete "work" directory when the Nextflow script is finished

#16 · opened Jun 05, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Discussion
- CLOSED
- 1
updated Aug 08, 2019
Add project communications into communications directory

#26 · opened Jul 08, 2019 by Joanna Fourquet V1.1- Contig affilation and binning Enhancement
- CLOSED
- 0
updated Aug 05, 2019