metagWGS issueshttps://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/issues2021-01-13T11:25:45+01:00https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/issues/79Test pipeline nf-core/mag2021-01-13T11:25:45+01:00Joanna FourquetTest pipeline nf-core/magV2.0https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/issues/67Remove 'Script' string in programs names2020-04-21T17:26:06+02:00Celine NoirotRemove 'Script' string in programs names
Script_rename_contigs_genes.py -> Rename_contigs_and_genes.py
Script_barplot_kaiju.py -> Generate_barplot_kaiju.py
Script_filter_cpm_contigs.py -> Filter_contig_per_cpm.py
Script_quantification_clusters_opti.py -> Quantification_clus...
Script_rename_contigs_genes.py -> Rename_contigs_and_genes.py
Script_barplot_kaiju.py -> Generate_barplot_kaiju.py
Script_filter_cpm_contigs.py -> Filter_contig_per_cpm.py
Script_quantification_clusters_opti.py -> Quantification_clusters_opti.py (why opti ??? if useless remove it)V2.0Joanna FourquetJoanna Fourquethttps://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/issues/45Test pipeline Snakemake ATLAS2021-01-13T11:27:22+01:00Joanna FourquetTest pipeline Snakemake ATLASCf directory name ATLAS_tests
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Silas Kieser, Joseph Brown, Evgeny M Zdobnov, Mirko Trajkovski, and Lee Ann McCue
bioRxiv posted 20 Augu...Cf directory name ATLAS_tests
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Silas Kieser, Joseph Brown, Evgeny M Zdobnov, Mirko Trajkovski, and Lee Ann McCue
bioRxiv posted 20 August 2019 doi:10.1101/737528V2.0https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/issues/28Add "when directive" into alignment_filter process (human reads deletion)2020-08-14T13:46:13+02:00Joanna FourquetAdd "when directive" into alignment_filter process (human reads deletion)Add "when directive" allowing to pass this step.Add "when directive" allowing to pass this step.V2.0