Commits · 7457c9a657d5295985ef1993fbc0ca848f7aa796 · genotoul-bioinfo / metagWGS

16 Sep, 2021 2 commits
- Update .gitlab-ci.yml · 7457c9a6
  Celine Noirot authored Sep 16, 2021
  
  7457c9a6
- Update .gitlab-ci.yml · c967f04b
  Celine Noirot authored Sep 16, 2021
  
  c967f04b
07 Sep, 2021 1 commit
- Update output.md · 179f9e37
  MARTIN Pierre authored Sep 07, 2021
  
  179f9e37
04 Aug, 2021 1 commit
- Update doc in quantification_by_contig_lineage.py · 55f58861
  Claire Hoede authored Aug 04, 2021
  
  55f58861
16 Jun, 2021 1 commit
- add build img · d75cc8fc
  Celine Noirot authored Jun 16, 2021
  
  d75cc8fc
03 Jun, 2021 11 commits
- Use and confidg container for mosdepth · 97f7ec27
  Celine Noirot authored Jun 03, 2021
  
  97f7ec27
- add mostdepth dependacies · 5839942b
  Celine Noirot authored Jun 03, 2021
  
  5839942b
- Adapt docs thanks to improvement · 935aaebc
  Celine Noirot authored Jun 03, 2021
  
  935aaebc
- Compute contig bed from idxstat file · ce2ea34a
  Celine Noirot authored Jun 03, 2021
  
  ce2ea34a
- Join channel to avoid mismatch of input files · 57820b3e
  Celine Noirot authored Jun 03, 2021
  
  57820b3e
- Add rename depth column · 52f47579
  Celine Noirot authored Jun 03, 2021
  
  52f47579
- Add idxstat column name · b07b2d1f
  Celine Noirot authored Jun 03, 2021
  
  b07b2d1f
- Column name in good order · 7bfc4b3a
  Celine Noirot authored Jun 03, 2021
  
  7bfc4b3a
- debug · b3ee363b
  Celine Noirot authored Jun 03, 2021
  
  b3ee363b
- Add depth param to merge_contig_quantif_perlineage.py · bcab3ecd
  Celine Noirot authored Jun 03, 2021
  
  bcab3ecd
- rename to merge_contig_quantif_perlineage.py · 87955f4c
  Celine Noirot authored Jun 03, 2021
  
  87955f4c
02 Jun, 2021 3 commits
- rename script merge_idxstats_percontig_lineage.py · 64bce452
  Celine Noirot authored Jun 02, 2021
```
Change doc
```
  64bce452
- Add /usr/local bioinfo · eb9b1188
  Celine Noirot authored Jun 02, 2021
  
  eb9b1188
- Integrate process genome_length into rename_contigs_genes · 0a069884
  Celine Noirot authored Jun 02, 2021
  
  0a069884
01 Jun, 2021 2 commits
- Add depth info · 57925b24
  Celine Noirot authored Jun 01, 2021
  
  57925b24
- add mosdeth · 02cc9686
  Celine Noirot authored Jun 01, 2021
  
  02cc9686
25 Feb, 2021 3 commits
- remove comments multiqc config · 54ae7d6c
  Joanna Fourquet authored Feb 25, 2021
  
  54ae7d6c
- redirect stdout CAT to a file · 91a30513
  Joanna Fourquet authored Feb 25, 2021
  
  91a30513
- update help for --step · ac61682d
  Joanna Fourquet authored Feb 25, 2021
  
  ac61682d
24 Feb, 2021 16 commits
- Update usage.md · fffb4ee3
  Joanna Fourquet authored Feb 24, 2021
  
  fffb4ee3
- change order in multiqc report · 5c22fe71
  Joanna Fourquet authored Feb 24, 2021
  
  5c22fe71
- Update use_case.md · b7bf5654
  Joanna Fourquet authored Feb 24, 2021
  
  b7bf5654
- Update use_case.md · a936a696
  Joanna Fourquet authored Feb 24, 2021
  
  a936a696
- authorized several steps into --step · d6933e91
  Joanna Fourquet authored Feb 24, 2021
  
  d6933e91
- Update use_case.md · 0ddd21bd
  Joanna Fourquet authored Feb 24, 2021
  
  0ddd21bd
- Update usage.md · f31b9765
  Joanna Fourquet authored Feb 24, 2021
  
  f31b9765
- Update usage.md · 28aab684
  Joanna Fourquet authored Feb 24, 2021
  
  28aab684
- Update usage.md · 1687488b
  Joanna Fourquet authored Feb 24, 2021
  
  1687488b
- Update usage.md · 75fb003a
  Joanna Fourquet authored Feb 24, 2021
  
  75fb003a
- Update usage.md · ef6d42fa
  Joanna Fourquet authored Feb 24, 2021
  
  ef6d42fa
- Update usage.md · e052d5c9
  Joanna Fourquet authored Feb 24, 2021
  
  e052d5c9
- Update usage.md · abb6514a
  Joanna Fourquet authored Feb 24, 2021
  
  abb6514a
- Update usage.md · c9d9562a
  Joanna Fourquet authored Feb 24, 2021
  
  c9d9562a
- Update usage.md · 53f3e620
  Joanna Fourquet authored Feb 24, 2021
  
  53f3e620
- Update usage.md · d1616ad0
  Joanna Fourquet authored Feb 24, 2021
  
  d1616ad0