Commits · 4f3bee966290156f1f9a13f53e46eeae17466904 · genotoul-bioinfo / metagWGS

21 Oct, 2021 10 commits
- step 06 · 4f3bee96
  MARTIN Pierre authored Oct 21, 2021
  
  4f3bee96
- merge · 5702351d
  MARTIN Pierre authored Oct 21, 2021
  
  5702351d
- steps 04 and 05 · d1b70ff9
  MARTIN Pierre authored Oct 21, 2021
  
  d1b70ff9
- start to add func annot · 9413b928
  Celine Noirot authored Oct 21, 2021
  
  9413b928
- Merge branch 'dsl2' of forgemia.inra.fr:genotoul-bioinfo/metagwgs into dsl2 · 64cb2c5e
  MARTIN Pierre authored Oct 21, 2021
  
  64cb2c5e
- added 03_filtering step · 81819209
  MARTIN Pierre authored Oct 21, 2021
  
  81819209
- reanme subworkflow · 28c6ba80
  Celine Noirot authored Oct 21, 2021
  
  28c6ba80
- Merge branch 'dsl2' of forgemia.inra.fr:genotoul-bioinfo/metagwgs into dsl2 · 7e5bb1cd
  Celine Noirot authored Oct 21, 2021
  
  7e5bb1cd
- Add alignment · f57f66b7
  Celine Noirot authored Oct 21, 2021
  
  f57f66b7
- assembly step · 2f775ab5
  MARTIN Pierre authored Oct 21, 2021
  
  2f775ab5
20 Oct, 2021 2 commits
- prokka merge · 7d087806
  MARTIN Pierre authored Oct 20, 2021
  
  7d087806
- 01_clean_qc step done · 2e1bedca
  MARTIN Pierre authored Oct 20, 2021
  
  2e1bedca
18 Oct, 2021 6 commits
- add skip step default · 6fa9bccf
  Celine Noirot authored Oct 18, 2021
  
  6fa9bccf
- add subworkflow alignment · 24cb95df
  Celine Noirot authored Oct 18, 2021
  
  24cb95df
- add long read, debug · 09460067
  Celine Noirot authored Oct 18, 2021
  
  09460067
- resolved problem with compilation · 0a4fbdca
  MARTIN Pierre authored Oct 18, 2021
  
  0a4fbdca
- merge main_dsl2.nf · c76cf945
  MARTIN Pierre authored Oct 18, 2021
  
  c76cf945
- clean qc step advancements · ce7da01a
  MARTIN Pierre authored Oct 18, 2021
  
  ce7da01a
14 Oct, 2021 4 commits
- add jean module and begining of LR wf · 2f6681bb
  Celine Noirot authored Oct 14, 2021
  
  2f6681bb
- update to subworkflows names · 43cf2959
  MARTIN Pierre authored Oct 14, 2021
  
  43cf2959
- Update README.md · daac9650
  MARTIN Pierre authored Oct 14, 2021
  
  daac9650
- changed nextflow.config basic cpm filter + added publishdir for kaiju step · 55a074fc
  MARTIN Pierre authored Oct 14, 2021
  
  55a074fc
13 Oct, 2021 1 commit
- updated README for validation + added launch_example.sh · 8af503e5
  MARTIN Pierre authored Oct 13, 2021
  
  8af503e5
11 Oct, 2021 1 commit
- dotted arrows for skippable steps · adb2133e
  MARTIN Pierre authored Oct 11, 2021
  
  adb2133e
05 Oct, 2021 3 commits
- added mosdepth singularity to CI/CD · 3d99f3d2
  MARTIN Pierre authored Oct 05, 2021
  
  3d99f3d2
- added poppler=0.81.0 to metagWGS.yml to implement pdfunite · dba6e249
  MARTIN Pierre authored Oct 05, 2021
  
  dba6e249
- sorted sample files to avoid random output · d675114f
  MARTIN Pierre authored Oct 05, 2021
  
  d675114f
04 Oct, 2021 2 commits
- Merge branch 'dev' of forgemia.inra.fr:genotoul-bioinfo/metagwgs into dev · 68d095e3
  MARTIN Pierre authored Oct 04, 2021
  
  68d095e3
- add .gitattributes for coloring · d4f3483d
  MARTIN Pierre authored Oct 01, 2021
  
  d4f3483d
01 Oct, 2021 1 commit
- add .gitattributes for coloring · a9948216
  MARTIN Pierre authored Oct 01, 2021
  
  a9948216
30 Sep, 2021 1 commit
- manual ci · 33616c16
  Celine Noirot authored Sep 30, 2021
  
  33616c16
28 Sep, 2021 6 commits
- Update usage.md · 00c2cc68
  MARTIN Pierre authored Sep 28, 2021
  
  00c2cc68
- update docs/Pipeline.png · 436673a1
  MARTIN Pierre authored Sep 28, 2021
  
  436673a1
- add docs/Pipeline.svg · 41a2e9aa
  MARTIN Pierre authored Sep 28, 2021
  
  41a2e9aa
- remove test folder + add docs/Pipeline.svg + update docs/Pipeline.png · 404ffc6f
  MARTIN Pierre authored Sep 28, 2021
  
  404ffc6f
- add docs/Pipeline.svg · 9857c326
  MARTIN Pierre authored Sep 28, 2021
  
  9857c326
- remove test folder + updated docs/Pipeline.png · b944e369
  MARTIN Pierre authored Sep 28, 2021
  
  b944e369
27 Sep, 2021 3 commits
- Merge branch 'dev' into 'master' · 342ba619
  Celine Noirot authored Sep 27, 2021
```
MR before tag 2.1

See merge request !11
```
  342ba619
- .gitignore py cache · cf858367
  MARTIN Pierre authored Sep 27, 2021
  
  cf858367
- .gitignore py cache · 30425ac4
  MARTIN Pierre authored Sep 27, 2021
  
  30425ac4