Commit ff63c2ec authored by Jean Mainguy's avatar Jean Mainguy
Browse files

remove old unused HIFI_QUAST module

parent add3f5cd
...@@ -38,22 +38,3 @@ process FILTERED_QUAST { ...@@ -38,22 +38,3 @@ process FILTERED_QUAST {
""" """
} }
process HIFI_QUAST {
tag "${sampleId}"
label 'QUAST'
publishDir "${params.outdir}/04_structural_annot/quast_hifi", mode: 'copy'
input:
tuple val(sampleId), path(assembly)
output:
path "${sampleId}/*", emit: all
path "${sampleId}/report.tsv", emit: report
script:
"""
mkdir ${sampleId}/
touch ${sampleId}/report.tsv
metaquast.py --threads ${task.cpus} --rna-finding --max-ref-number 0 --min-contig 0 ${assembly} -o ${sampleId}
"""
}
\ No newline at end of file
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