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genotoul-bioinfo
metagWGS
Commits
f620a59f
Commit
f620a59f
authored
Jan 07, 2022
by
Jean Mainguy
Browse files
fix missing type in argument parser
parent
056a884b
Pipeline
#47495
skipped with stage
Changes
1
Pipelines
1
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Inline
Side-by-side
bin/aln2taxaffi.py
View file @
f620a59f
...
...
@@ -74,7 +74,7 @@ def parse_arguments():
parser
.
add_argument
(
'-c'
,
'--min_coverage'
,
default
=
70
,
help
=
"percentage of coverage"
)
parser
.
add_argument
(
'--top'
,
default
=
10
,
parser
.
add_argument
(
'--top'
,
default
=
10
,
type
=
int
,
help
=
"Keep diamond alignments within this percentage range of top alignment score"
)
parser
.
add_argument
(
'--keep_only_best_aln'
,
...
...
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