Commit f454f4e4 authored by Jean Mainguy's avatar Jean Mainguy
Browse files

Use current paths for taxdump and accession2taxid to always use the most...

Use current paths for taxdump and accession2taxid to always use the most recent db available on the cluster. 
parent 4bfe5e51
Pipeline #48457 skipped with stage
......@@ -8,8 +8,8 @@ params {
kaiju_db_dir = "/bank/kaijudb/kaijudb_refseq_2020-05-25/"
eggnog_mapper_db_dir = "/bank/eggnog-mapper/eggnog-mapper-2.0.4-rf1/data/"
eggnog_mapper_db_download = false
taxdump = "/work/bank/ncbi/blast/nr/nr_2022-1-5/flat/pub/taxonomy/new_taxdump/"
accession2taxid = "/work/bank/ncbi/blast/nr/nr_2022-1-5/flat/pub/taxonomy/accession2taxid/prot.accession2taxid.FULL"
taxdump = "/work/bank/ncbi/blast/nr/current/flat/pub/taxonomy/new_taxdump/"
accession2taxid = "/work/bank/ncbi/blast/nr/current/flat/pub/taxonomy/accession2taxid/prot.accession2taxid.FULL"
diamond_bank = "/bank/ncbi/blast/nr/current/diamond/nr.dmnd"
// change following path if you want to use genotoul genomes:
host_index = ""
......
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