Commit bcab3ecd authored by Celine Noirot's avatar Celine Noirot
Browse files

Add depth param to merge_contig_quantif_perlineage.py

parent 87955f4c
......@@ -1103,7 +1103,7 @@ process diamond_parser {
script:
"""
aln2taxaffi.py -a ${prot_accession2taxid} --taxonomy ${taxonomy} -o ${replicateId} ${diamond_file} ${contigs_len}
merge_contig_quantif_perlineage.py -i ${idxstats} -c ${replicateId}.percontig.tsv -o ${replicateId}_quantif_percontig
merge_contig_quantif_perlineage.py -i ${idxstats} -c ${replicateId}.percontig.tsv -m ${depth} -o ${replicateId}_quantif_percontig
"""
}
......
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