Commit b921a480 authored by Joanna Fourquet's avatar Joanna Fourquet
Browse files

Update output.md

parent 3b9d9340
......@@ -58,8 +58,8 @@ The `results/` directory contains a sub-directory for each step launched:
| File or directory/ | Description |
| ----------------------- | --------------------------------------- |
| `SAMPLE_NAME_select_contigs.[percent_identity].fasta` | Nucleotide sequence of contigs selected after filtering step with a percentage of identity of [percent_identity]. |
| `SAMPLE_NAME_discard_contigs.[percent_identity].fasta` | Nucleotide sequence of contigs discarded after filtering step with a percentage of identity of [percent_identity]. |
| `SAMPLE_NAME_select_contigs_cpm[percent_identity].fasta` | Nucleotide sequence of contigs selected after filtering step with a percentage of identity of [percent_identity]. |
| `SAMPLE_NAME_discard_contigs_cpm[percent_identity].fasta` | Nucleotide sequence of contigs discarded after filtering step with a percentage of identity of [percent_identity]. |
| `SAMPLE_NAME_select_contigs_QC/` | Contains metaQUAST quality control files of filtered contigs. |
#### **04_structural_annot/**
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