Commit a4d66930 authored by MARTIN Pierre's avatar MARTIN Pierre
Browse files

singularity paths change

parent 263e2acc
...@@ -70,17 +70,6 @@ params { ...@@ -70,17 +70,6 @@ params {
// Load base.config by default for all pipelines. // Load base.config by default for all pipelines.
includeConfig 'conf/base.config' includeConfig 'conf/base.config'
// Location of each singularity image (modify with proper path)
process {
container = '/home/pmartin2/work/metaG/singularity_img/metagwgs.sif'
withLabel: eggnog {
container = '/home/pmartin2/work/metaG/singularity_img/eggnog_mapper.sif'
}
withLabel: mosdepth {
container = '/home/pmartin2/work/metaG/singularity_img/mosdepth.sif'
}
}
// Define profiles. // Define profiles.
profiles { profiles {
debug { includeConfig 'conf/debug.config' } debug { includeConfig 'conf/debug.config' }
...@@ -93,6 +82,8 @@ profiles { ...@@ -93,6 +82,8 @@ profiles {
singularity { includeConfig 'conf/singularity.config' } singularity { includeConfig 'conf/singularity.config' }
} }
// Location of each singularity image (modify with proper path)
process { process {
container = '$SING_IMG_FOLDER/metagwgs.sif' container = '$SING_IMG_FOLDER/metagwgs.sif'
withLabel: EGGNOG { withLabel: EGGNOG {
......
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