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genotoul-bioinfo
metagWGS
Commits
a4d66930
Commit
a4d66930
authored
Dec 14, 2021
by
MARTIN Pierre
Browse files
singularity paths change
parent
263e2acc
Changes
1
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Inline
Side-by-side
nextflow.config
View file @
a4d66930
...
...
@@ -70,17 +70,6 @@ params {
//
Load
base
.
config
by
default
for
all
pipelines
.
includeConfig
'conf/base.config'
//
Location
of
each
singularity
image
(
modify
with
proper
path
)
process
{
container
=
'/home/pmartin2/work/metaG/singularity_img/metagwgs.sif'
withLabel
:
eggnog
{
container
=
'/home/pmartin2/work/metaG/singularity_img/eggnog_mapper.sif'
}
withLabel
:
mosdepth
{
container
=
'/home/pmartin2/work/metaG/singularity_img/mosdepth.sif'
}
}
//
Define
profiles
.
profiles
{
debug
{
includeConfig
'conf/debug.config'
}
...
...
@@ -93,6 +82,8 @@ profiles {
singularity
{
includeConfig
'conf/singularity.config'
}
}
//
Location
of
each
singularity
image
(
modify
with
proper
path
)
process
{
container
=
'$SING_IMG_FOLDER/metagwgs.sif'
withLabel
:
EGGNOG
{
...
...
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