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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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genotoul-bioinfo
metagWGS
Commits
97f7ec27
Commit
97f7ec27
authored
Jun 03, 2021
by
Celine Noirot
Browse files
Use and confidg container for mosdepth
parent
5839942b
Pipeline
#34202
passed with stages
in 16 minutes and 21 seconds
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2
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1
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conf/base.config
View file @
97f7ec27
...
...
@@ -113,4 +113,7 @@ process {
withLabel
:
eggnog
{
container
=
'file://metagwgs/env/eggnog_mapper.sif'
}
withLabel
:
mosdepth
{
container
=
'file://metagwgs/env/mosdepth.sif'
}
}
main.nf
View file @
97f7ec27
...
...
@@ -765,7 +765,7 @@ process depth_on_contigs {
script:
"""
/usr/local/bioinfo/src/mosdepth/mosdepth-v0.2.5/
mosdepth -b ${bed} -Q20 -n -x ${replicateId} ${bam}
mosdepth -b ${bed} -Q20 -n -x ${replicateId} ${bam}
"""
}
...
...
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