Use and confidg container for mosdepth

conf/base.config

@@ -113,4 +113,7 @@ process {
     withLabel: eggnog {
         container = 'file://metagwgs/env/eggnog_mapper.sif'
         }
+    withLabel: mosdepth {
+        container = 'file://metagwgs/env/mosdepth.sif'
+    }
 }

main.nf

@@ -765,7 +765,7 @@ process depth_on_contigs {
 
    script:
    """
-   /usr/local/bioinfo/src/mosdepth/mosdepth-v0.2.5/mosdepth -b ${bed} -Q20 -n -x ${replicateId} ${bam}
+   mosdepth -b ${bed} -Q20 -n -x ${replicateId} ${bam}
    """
 }