redirect stdout CAT to a file

main.nf

@@ -1419,9 +1419,9 @@ process cat {
     COUNT=`ls -1 bins/*.fa 2>/dev/null | wc -l`
     if [ \$COUNT != 0 ]
     then
-        CAT bins -b "bins/" -d database/ -t taxonomy/ -n "${task.cpus}" -s .fa --top 6 -o "${replicateId}" --I_know_what_Im_doing
-        CAT add_names -i "${replicateId}.ORF2LCA.txt" -o "${replicateId}.ORF2LCA.names.txt" -t taxonomy/
-        CAT add_names -i "${replicateId}.bin2classification.txt" -o "${replicateId}.bin2classification.names.txt" -t taxonomy/
+        CAT bins -b "bins/" -d database/ -t taxonomy/ -n "${task.cpus}" -s .fa --top 6 -o "${replicateId}" --I_know_what_Im_doing > stdout_CAT.txt
+        CAT add_names -i "${replicateId}.ORF2LCA.txt" -o "${replicateId}.ORF2LCA.names.txt" -t taxonomy/ >> stdout_CAT.txt
+        CAT add_names -i "${replicateId}.bin2classification.txt" -o "${replicateId}.bin2classification.names.txt" -t taxonomy/ >> stdout_CAT.txt
     else
         echo "Sample ${replicateId}: no bins found, it is impossible to make taxonomic affiliation of bins."
     fi