If a test resulted in 'Failed' instead of 'Passed', the stdout is printed in log.
Sometimes, files are not tested because present in exp_dir but not in obs_dir. Then a log ft_\[step\].not_tested if created containing names of missing files. In 02_assembly, there are two possible assembly programs that can be used: metaspades and megahit, resulting in this .not_tested log file. Not tested files are not counted in missed count.
\ No newline at end of file
Sometimes, files are not tested because present in exp_dir but not in obs_dir. Then a log ft_\[step\].not_tested is created containing names of missing files. In 02_assembly, there are two possible assembly programs that can be used: metaspades and megahit, resulting in this .not_tested log file. Not tested files are not counted in missed count.