add empty ch_assembly to prevent crash

81a693c7 · Jean Mainguy · 4f5146ec · 81a693c7
Commit 81a693c7 authored Jun 10, 2022 by Jean Mainguy
--- a/subworkflows/short_reads.nf
+++ b/subworkflows/short_reads.nf
@@ -29,6 +29,7 @@ workflow SHORT_READS {
 		ch_dedup_report = Channel.empty()
 		ch_assembly_report = Channel.empty()
 		ch_filtered_report = Channel.empty()
+		ch_assembly = Channel.empty()

 		if ( !params.skip_clean ) {
 			S01_CLEAN_QC (